Evidence map›Paper›PMID 29320387›Full record

ArticleGenes2018

Identification of Inherited Retinal Disease-Associated Genetic Variants in 11 Candidate Genes.

Galuh D N Astuti, L Ingeborgh van den Born, M Imran Khan, Christian P Hamel, Béatrice Bocquet, Gaël Manes, Mathieu Quinodoz, Manir Ali, Carmel Toomes, Martin McKibbin and 7 more

Abstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Journal of medical genetics · 2022
    Article
  9. Review
  10. MutatedInternational journal of molecular sciences · 2021
    Article
  11. Metabolism in the Zebrafish Retina.Journal of developmental biology · 2021
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Galuh D N AstutiDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands. Galuh.Astuti@radboudumc.nl.
L Ingeborgh van den BornThe Rotterdam Eye Hospital, 3011 BH Rotterdam, The Netherlands. Born@eyehospital.nl.
M Imran KhanDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands. MuhammadImran.Khan@radboudumc.nl.
Christian P HamelInstitut National de la Santé et de la Recherche Médicale, Institute for Neurosciences of Montpellier, 34080 Montpellier, France. christian.hamel@inserm.fr.
Béatrice BocquetInstitut National de la Santé et de la Recherche Médicale, Institute for Neurosciences of Montpellier, 34080 Montpellier, France. Beatrice.Bocquet@inserm.fr.
Gaël ManesInstitut National de la Santé et de la Recherche Médicale, Institute for Neurosciences of Montpellier, 34080 Montpellier, France. Gael.Manes@inserm.fr.
Mathieu QuinodozDepartment of Computational Biology, Unit of Medical Genetics, University of Lausanne, 1015 Lausanne, Switzerland. Mathieu.Quinodoz@unil.ch.
Manir AliSection of Ophthalmology & Neuroscience, Leeds Institute of Biomedical & Clinical Sciences, University of Leeds, St. James's University Hospital, LS9 7TF Leeds, UK. M.Ali@leeds.ac.uk.
Carmel ToomesSection of Ophthalmology & Neuroscience, Leeds Institute of Biomedical & Clinical Sciences, University of Leeds, St. James's University Hospital, LS9 7TF Leeds, UK. C.Toomes@leeds.ac.uk.ORCID 0000-0001-8373-9545
Martin McKibbinDepartment of Ophthalmology, St. James's University Hospital, LS9 7TF Leeds, UK. Martin.McKibbin@nhs.net.
Mohammed E El-AsragSection of Ophthalmology & Neuroscience, Leeds Institute of Biomedical & Clinical Sciences, University of Leeds, St. James's University Hospital, LS9 7TF Leeds, UK.
Lonneke Haer-WigmanDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands. Lonneke.Haer-Wigman@radboudumc.nl.
Chris F InglehearnSection of Ophthalmology & Neuroscience, Leeds Institute of Biomedical & Clinical Sciences, University of Leeds, St. James's University Hospital, LS9 7TF Leeds, UK. C.Inglehearn@leeds.ac.uk.
Graeme C M BlackCentre for Genomic Medicine, St. Mary's Hospital, Manchester Academic Health Science Centre, University of Manchester, M13 9PL Manchester, UK. Graeme.Black@manchester.ac.uk.
Carel B HoyngDepartment of Ophthalmology, Radboud University Medical Center, 6525 EX Nijmegen, The Netherlands. Carel.Hoyng@radboudumc.nl.
Frans P M CremersDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands. Frans.Cremers@radboudumc.nl.
Susanne RoosingDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands. Susanne.Roosing@radboudumc.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inherited retinal diseases (IRDs) display an enormous genetic heterogeneity. Whole exome sequencing (WES) recently identified genes that were mutated in a small proportion of IRD cases. Consequently, finding a second case or family carrying pathogenic variants in the same candidate gene often is challenging. In this study, we searched for novel candidate IRD gene-associated variants in isolated IRD families, assessed their causality, and searched for novel genotype-phenotype correlations. Whole exome sequencing was performed in 11 probands affected with IRDs. Homozygosity mapping data was available for five cases. Variants with minor allele frequencies ≤ 0.5% in public databases were selected as candidate disease-causing variants. These variants were ranked based on their: (a) presence in a gene that was previously implicated in IRD; (b) minor allele frequency in the Exome Aggregation Consortium database (ExAC); (c) in silico pathogenicity assessment using the combined annotation dependent depletion (CADD) score; and (d) interaction of the corresponding protein with known IRD-associated proteins. Twelve unique variants were found in 11 different genes in 11 IRD probands. Novel autosomal recessive and dominant inheritance patterns were found for variants in Small Nuclear Ribonucleoprotein U5 Subunit 200 (

Indexed as

candidate retinal disease genesinherited retinal diseaseswhole exome sequencing

Identifiers

PMID29320387
PMCPMC5793174

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.