Evidence map›Paper›PMID 29320178›Full record

ArticleJournal of chemical information and modeling2018

Novel K-Ras G12C Switch-II Covalent Binders Destabilize Ras and Accelerate Nucleotide Exchange.

Chimno I Nnadi, Meredith L Jenkins, Daniel R Gentile, Leslie A Bateman, Daniel Zaidman, Trent E Balius, Daniel K Nomura, John E Burke, Kevan M Shokat, Nir London

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Discovery of Covalent Ligands with AlphaFold3.Journal of the American Chemical Society · 2026
    Article
  3. Article
  4. Computational Design of Lysine Targeting Covalent Binders Using Rosetta.Journal of chemical information and modeling · 2025
    Article
  5. Blocking C-terminal processing of KRAS4b via a direct covalent attack on the CaaX-box cysteine.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Journal of the American Chemical Society · 2025
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Advances in covalent drug discovery.Nature reviews. Drug discovery · 2022
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Tunable Methacrylamides for Covalent Ligand Directed Release Chemistry.Journal of the American Chemical Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chimno I NnadiDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco , San Francisco, California 94158, United States.ORCID 0000-0003-3003-7691
Meredith L JenkinsDepartment of Biochemistry and Microbiology. University of Victoria , Victoria, BC V8W 2Y2, Canada.
Daniel R GentileDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco , San Francisco, California 94158, United States.
Leslie A BatemanDepartments of Chemistry, Molecular and Cell Biology, and Nutritional Sciences and Toxicology, University of California, Berkeley , Berkeley, California 94720, United States.
Daniel ZaidmanDepartment of Organic Chemistry, The Weizmann Institute of Science , Rehovot, 7610001, Israel.
Trent E BaliusDepartment of Pharmaceutical Chemistry, University of California, San Francisco , San Francisco, California 94158, United States.
Daniel K NomuraDepartments of Chemistry, Molecular and Cell Biology, and Nutritional Sciences and Toxicology, University of California, Berkeley , Berkeley, California 94720, United States.ORCID 0000-0003-1614-8360
John E BurkeDepartment of Biochemistry and Microbiology. University of Victoria , Victoria, BC V8W 2Y2, Canada.ORCID 0000-0001-7904-9859
Kevan M ShokatDepartment of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco , San Francisco, California 94158, United States.ORCID 0000-0002-6900-8380
Nir LondonDepartment of Organic Chemistry, The Weizmann Institute of Science , Rehovot, 7610001, Israel.ORCID 0000-0003-2687-0699

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Annotating the Role of Dysregulated Inositol Phosphate Metabolism in Malignant CaR01CA172667 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOMURA, DANIEL · 2013 to 2017
$1.7M
Drugging the Switch-II Pocket of K-RasR01CA190408 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHOKAT, KEVAN M. · 2014 to 2018
$1.5M
Development of covalent docking to identify new cysteine-targeted K-Ras inhibitors to address allelic variation in cancerF30CA214015 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NNADI, CHIMNO IHUOMA · 2017 to 2019
$122k
CIHRHoward Hughes Medical InstituteNCI NIH HHS F30 CA214015NCI NIH HHS R01 CA172667NCI NIH HHS R01 CA190408NIGMS NIH HHS T32 GM007618NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

The success of targeted covalent inhibitors in the global pharmaceutical industry has led to a resurgence of covalent drug discovery. However, covalent inhibitor design for flexible binding sites remains a difficult task due to a lack of methodological development. Here, we compared covalent docking to empirical electrophile screening against the highly dynamic target K-Ras

Indexed as

Molecular Docking SimulationBiophysical PhenomenaDrug DiscoveryMass SpectrometryNucleotidesProtein Conformationras ProteinsNucleotidesras Proteins

Identifiers

PMID29320178
PMCPMC6179444

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.