Evidence map›Paper›PMID 29319931›Full record

ArticleProteomics2018

Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Clara Moon, Gregory S Stupp, Andrew I Su, Dennis W Wolan

Abstract read
In one paragraph

Article in Proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Clara MoonDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Gregory S StuppDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Andrew I SuDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Dennis W WolanDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Scripps Research Institute · US

Funding

TRAININGU54GM114833 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LINDSEY, MERRY L., PING, PEIPEI · 2014 to 2017
$13.8M
PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
Identification of microbiome proteins associated with IBDR21CA181027 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI WOLAN, DENNIS WILLIAM · 2014 to 2015
$453k
NCI NIH HHS R21 CA181027NIAID NIH HHS T32 AI007244NIGMS NIH HHS U54 GM114833
6 · The paper itself

Abstract

Metaproteomics can greatly assist established high-throughput sequencing methodologies to provide systems biological insights into the alterations of microbial protein functionalities correlated with disease-associated dysbiosis of the intestinal microbiota. Here, the authors utilize the well-characterized murine T cell transfer model of colitis to find specific changes within the intestinal luminal proteome associated with inflammation. MS proteomic analysis of colonic samples permitted the identification of ≈10 000-12 000 unique peptides that corresponded to 5610 protein clusters identified across three groups, including the colitic Rag1

Indexed as

MicrobiotaAnimalsBacterial ProteinsColitisColonDisease Models, AnimalInflammationMiceMice, Inbred C57BLProteomeBacterial ProteinsProteomecolitisComPILmetaproteomicsmicrobiome

Identifiers

PMID29319931
PMCPMC5921860
OpenAlexW2952859665

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.