Evidence map›Paper›PMID 29317598›Full record

ArticleTranslational psychiatry2018

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons.

Ping Wang, Dejian Zhao, Herbert M Lachman, Deyou Zheng

Abstract read
In one paragraph

Article in Translational psychiatry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
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  9. Article
  10. Decoding the genetic landscape of autism: A comprehensive review.World journal of clinical pediatrics · 2024
    Article
  11. Article
  12. Review
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ping WangDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA.
Dejian ZhaoDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA.
Herbert M LachmanDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA.
Deyou ZhengDepartment of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA. deyou.zheng@einstein.yu.edu.ORCID http://orcid.org/0000-0003-4354-5337

Funding

Translational Neuroimaging CoreP30HD071593 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WALKLEY, STEVEN UPSHAW · 2011 to 2015
$5.6M
Molecular and Cellular Mechanisms in Coronary Artery Development and AnomaliesR01HL133120 · NHLBI · UNIVERSITY OF CHICAGO · PI BIN ZHOU · 2016 to 2026
$4.6M
Monoallelic expression in neurons derived from induced pluripotent stem cellsR01MH099427 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI LACHMAN, HERBERT M · 2013 to 2017
$2.1M
NHLBI NIH HHS R01 HL133120NICHD NIH HHS P30 HD071593NIMH NIH HHS R01 MH099427
6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is highly heritable but genetically heterogeneous. The affected neural circuits and cell types remain unclear and may vary at different developmental stages. By analyzing multiple sets of human single cell transcriptome profiles, we found that ASD candidates showed relatively enriched gene expression in neurons, especially in inhibitory neurons. ASD candidates were also more likely to be the hubs of the co-expression gene module that is highly expressed in inhibitory neurons, a feature not detected for excitatory neurons. In addition, we found that upregulated genes in multiple ASD cortex samples were enriched with genes highly expressed in inhibitory neurons, suggesting a potential increase of inhibitory neurons and an imbalance in the ratio between excitatory and inhibitory neurons in ASD brains. Furthermore, the downstream targets of several ASD candidates, such as CHD8, EHMT1 and SATB2, also displayed enriched expression in inhibitory neurons. Taken together, our analyses of single cell transcriptomic data suggest that inhibitory neurons may be a major neuron subtype affected by the disruption of ASD gene networks, providing single cell functional evidence to support the excitatory/inhibitory (E/I) imbalance hypothesis.

Indexed as

Gene Regulatory NetworksAutism Spectrum DisorderCerebral CortexDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHumansMatrix Attachment Region Binding ProteinsNeuronsTranscription FactorsTranscriptomeCHD8 protein, humanDNA-Binding ProteinsEHMT1 protein, humanHistone-Lysine N-MethyltransferaseMatrix Attachment Region Binding ProteinsSATB2 protein, humanTranscription Factors

Identifiers

PMID29317598
PMCPMC5802446

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.