Evidence map›Paper›PMID 29317495›Full record

ArticleThe Journal of biological chemistry2018

Structural and mechanistic analysis of a β-glycoside phosphorylase identified by screening a metagenomic library.

Spencer S Macdonald, Ankoor Patel, Veronica L C Larmour, Connor Morgan-Lang, Steven J Hallam, Brian L Mark, Stephen G Withers

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.International journal of molecular sciences · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Spencer S MacdonaldFrom the Departments of Chemistry and Biochemistry and.
Ankoor Patelthe Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2.
Veronica L C Larmourthe Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2.
Connor Morgan-LangGraduate Program in Bioinformatics, and.
Steven J Hallamthe Genome Science and Technology Program.
Brian L Markthe Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2.
Stephen G WithersFrom the Departments of Chemistry and Biochemistry and withers@chem.ubc.ca.
University of British Columbia · CAUniversity of Manitoba · CACanada's Michael Smith Genome Sciences Centre · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycoside phosphorylases have considerable potential as catalysts for the assembly of useful glycans for products ranging from functional foods and prebiotics to novel materials. However, the substrate diversity of currently identified phosphorylases is relatively small, limiting their practical applications. To address this limitation, we developed a high-throughput screening approach using the activated substrate 2,4-dinitrophenyl β-d-glucoside (DNPGlc) and inorganic phosphate for identifying glycoside phosphorylase activity and used it to screen a large insert metagenomic library. The initial screen, based on release of 2,4-dinitrophenyl from DNPGlc in the presence of phosphate, identified the gene

Indexed as

Gene LibraryMetagenomicsCatalytic DomainCelluloseGlycosidesKineticsModels, MolecularPhosphorylasesPhosphorylationCelluloseGlycosidesPhosphorylasesbiofuelbiomassCAZycelluloseenzyme kineticsenzyme mechanismglycosidasesglycoside hydrolasemechanismmetagenomicsphosphorylaseβ-glucose 1-phosphate

Identifiers

PMID29317495
PMCPMC5836126
OpenAlexW2783565031

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.