Evidence map›Paper›PMID 29316906›Full record

ArticleBMC biotechnology2018

The function of tcf3 in medaka embryos: efficient knockdown with pePNAs.

Gerlinde Doenz, Sebastian Dorn, Narges Aghaallaei, Baubak Bajoghli, Elisabeth Riegel, Michaela Aigner, Holger Bock, Birgit Werner, Thomas Lindhorst, Thomas Czerny

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Gerlinde DoenzDepartment for Applied Life Sciences, University of Applied Sciences, FH Campus Wien, Helmut-Qualtinger-Gasse 2, A-1030, Vienna, Austria.
Sebastian DornDepartment for Applied Life Sciences, University of Applied Sciences, FH Campus Wien, Helmut-Qualtinger-Gasse 2, A-1030, Vienna, Austria.
Narges AghaallaeiCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 230, 69120, Heidelberg, Germany.
Baubak BajoghliDepartment of Hematology, Oncology, Immunology, Rheumatology and Pulmonology, University Hospital Tübingen, Otfried-Mueller-Strasse 10, 72076, Tübingen, Germany.
Elisabeth RiegelDepartment for Applied Life Sciences, University of Applied Sciences, FH Campus Wien, Helmut-Qualtinger-Gasse 2, A-1030, Vienna, Austria.
Michaela AignerSandoz GmbH, Biochemiestraße 10, A-6250, Kundl, Austria.
Holger BockCAST Gründungszentrum GmbH, Wilhelm-Greil-Straße 15, A-6020, Innsbruck, Austria.
Birgit WernerUGISense AG, c/o Nordwind Capital GmbH, Residenzstrasse 18, 80333, München, Germany.
Thomas LindhorstUGISense AG, c/o Nordwind Capital GmbH, Residenzstrasse 18, 80333, München, Germany.
Thomas CzernyDepartment for Applied Life Sciences, University of Applied Sciences, FH Campus Wien, Helmut-Qualtinger-Gasse 2, A-1030, Vienna, Austria. thomas.czerny@fh-campuswien.ac.at.ORCID 0000-0002-5119-3872
Hochschule Campus Wien · ATBMW (Germany) · DEBioforschung Austria · ATHealth University of Applied Sciences Tyrol · ATHeidelberg University · DEUniversity Children's Hospital Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe application of antisense molecules, such as morpholino oligonucleotides, is an efficient method of gene inactivation in vivo. We recently introduced phosphonic ester modified peptide nucleic acids (PNA) for in vivo loss-of-function experiments in medaka embryos. Here we tested novel modifications of the PNA backbone to knockdown the medaka tcf3 gene.

resultsA single tcf3 gene exists in the medaka genome and its inactivation strongly affected eye development of the embryos, leading to size reduction and anophthalmia in severe cases. The function of Tcf3 strongly depends on co-repressor interactions. We found interactions with Groucho/Tle proteins to be most important for eye development. Using a dominant negative approach for combined inactivation of all groucho/tle genes also resulted in eye phenotypes, as did interference with three individual tle genes.

conclusionsOur results show that side chain modified PNAs come close to the knockdown efficiency of morpholino oligonucleotides in vivo. A single medaka tcf3 gene combines the function of the two zebrafish paralogs hdl and tcf3b. In combination with Groucho/Tle corepressor proteins Tcf3 acts in anterior development and is critical for eye formation.

Indexed as

AnimalsAnimals, Genetically ModifiedAnophthalmosEmbryo, NonmammalianEyeEye AbnormalitiesFish ProteinsGene Expression Regulation, DevelopmentalGene Knockdown TechniquesMorpholinosOryziasPeptide Nucleic AcidsRepressor ProteinsTranscription FactorsFish ProteinsMorpholinosPeptide Nucleic AcidsRepressor ProteinsTranscription FactorsGrouchoKnockdownMedakaPNATcf3Tle

Identifiers

PMID29316906
PMCPMC5759164
OpenAlexW2782944648

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.