Evidence map›Paper›PMID 29316146›Full record

ArticleAngewandte Chemie (International ed. in English)2018

Modifying the Steric Properties in the Second Coordination Sphere of Designed Peptides Leads to Enhancement of Nitrite Reductase Activity.

Karl J Koebke, Fangting Yu, Elvin Salerno, Casey Van Stappen, Alison G Tebo, James E Penner-Hahn, Vincent L Pecoraro

Open access · bronzeAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  7. Review
  8. De novo metalloprotein design.Nature reviews. Chemistry · 2022
    Article
  9. Nitrite reductase activity within an antiparallel de novo scaffold.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Article
  10. Article
  11. Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.Angewandte Chemie (International ed. in English) · 2020
    Review
  12. Rational De Novo Design of a Cu Metalloenzyme for Superoxide Dismutation.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Karl J KoebkeDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0003-2198-2667
Fangting YuDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Elvin SalernoDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Casey Van StappenDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Alison G TeboDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
James E Penner-HahnDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0003-0314-1274
Vincent L PecoraroDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-1540-5735
University of Michigan · US

Funding

Toxic Metal Complexation By de Novo Designed PeptidesR01ES012236 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PECORARO, VINCENT L · 2003 to 2018
$4.4M
NIEHS NIH HHS R01 ES012236
6 · The paper itself

Abstract

Protein design is a useful strategy to interrogate the protein structure-function relationship. We demonstrate using a highly modular 3-stranded coiled coil (TRI-peptide system) that a functional type 2 copper center exhibiting copper nitrite reductase (NiR) activity exhibits the highest homogeneous catalytic efficiency under aqueous conditions for the reduction of nitrite to NO and H

Indexed as

Protein EngineeringAmino Acid SequenceBinding SitesBiocatalysisCopperKineticsMutagenesis, Site-DirectedNitrite ReductasesPeptidesProtein Structure, TertiaryX-Ray Absorption SpectroscopyCopperNitrite ReductasesPeptidescopper nitrite reductasede novo designsecond coordination spheresteric propertiesTRI peptide

Identifiers

PMID29316146
PMCPMC5869106
OpenAlexW2783223544

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.