Evidence map›Paper›PMID 29315591›Full record

ArticleThe New phytologist2018

Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility.

Wagner R de Souza, Polyana K Martins, Jackie Freeman, Till K Pellny, Louise V Michaelson, Bruno L Sampaio, Felipe Vinecky, Ana P Ribeiro, Barbara A D B da Cunha, Adilson K Kobayashi and 16 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 101 citations in OpenAlex.

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  13. Natural variation inFrontiers in plant science · 2023
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  14. Profiling of cool-season forage arabinoxylansFrontiers in plant science · 2023
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  17. MicroRNAs expression profiles in early responses to different levels of water deficit inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  18. Multi-omics intervention inFrontiers in plant science · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 4 countries.

Wagner R de SouzaEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Polyana K MartinsEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Jackie FreemanPlant Sciences, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Till K PellnyPlant Sciences, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Louise V MichaelsonPlant Sciences, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Bruno L SampaioEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Felipe VineckyEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Ana P RibeiroEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Barbara A D B da CunhaEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Adilson K KobayashiEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Patricia A de OliveiraEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Raquel B CampanhaEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Thályta F PachecoEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Danielly C I MartarelloDepartment of Biochemistry, State University of Maringá, Maringá, Paraná, 87020-900, Brazil.
Rogério MarchiosiDepartment of Biochemistry, State University of Maringá, Maringá, Paraná, 87020-900, Brazil.
Osvaldo Ferrarese-FilhoDepartment of Biochemistry, State University of Maringá, Maringá, Paraná, 87020-900, Brazil.
Wanderley D Dos SantosDepartment of Biochemistry, State University of Maringá, Maringá, Paraná, 87020-900, Brazil.
Robson TramontinaBrazilian Bioethanol Science and Technology Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Sao Paulo, 13083-100, Brazil.
Fabio M SquinaPrograma de Processos Tecnológicos e Ambientais, Universidade de Sorocaba (UNISO), Sorocaba, 18060-000, Brazil.
Danilo C CentenoCentre of Natural Sciences and Humanities, Federal University of ABC, São Bernardo do Campo, SP, 09606-045, Brazil.
Marília GasparDepartment of Plant Physiology and Biochemistry, Institute of Botany, Sao Paulo, 04301-012, 04301-902, Brazil.
Marcia R BragaDepartment of Plant Physiology and Biochemistry, Institute of Botany, Sao Paulo, 04301-012, 04301-902, Brazil.
Marco A S TinéDepartment of Plant Physiology and Biochemistry, Institute of Botany, Sao Paulo, 04301-012, 04301-902, Brazil.
John RalphDepartment of Biochemistry, University of Wisconsin, Madison, WI, 537, USA.
Rowan A C MitchellPlant Sciences, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.ORCID 0000-0002-1412-8828
Hugo B C MolinariEmbrapa Agroenergy, Brasília, DF, 70770901, Brazil.
Brazilian Agricultural Research Corporation · BRRothamsted Research · GBUniversidade Estadual de Maringá · BRInstituto de Botânica · BRBrazilian Center for Research in Energy and Materials · BRUniversidade de Sorocaba · BRUniversidade Federal do ABC · BRUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Feruloylation of arabinoxylan (AX) in grass cell walls is a key determinant of recalcitrance to enzyme attack, making it a target for improvement of grass crops, and of interest in grass evolution. Definitive evidence on the genes responsible is lacking so we studied a candidate gene that we identified within the BAHD acyl-CoA transferase family. We used RNA interference (RNAi) silencing of orthologs in the model grasses Setaria viridis (SvBAHD01) and Brachypodium distachyon (BdBAHD01) and determined effects on AX feruloylation. Silencing of SvBAHD01 in Setaria resulted in a c. 60% decrease in AX feruloylation in stems consistently across four generations. Silencing of BdBAHD01 in Brachypodium stems decreased feruloylation much less, possibly due to higher expression of functionally redundant genes. Setaria SvBAHD01 RNAi plants showed: no decrease in total lignin, approximately doubled arabinose acylated by p-coumarate, changes in two-dimensional NMR spectra of unfractionated cell walls consistent with biochemical estimates, no effect on total biomass production and an increase in biomass saccharification efficiency of 40-60%. We provide the first strong evidence for a key role of the BAHD01 gene in AX feruloylation and demonstrate that it is a promising target for improvement of grass crops for biofuel, biorefining and animal nutrition applications.

Indexed as

BiomassGenes, PlantSuppression, GeneticAcidsBrachypodiumCarbohydrate MetabolismCell WallCoenzyme A-TransferasesCoumaric AcidsGene Expression Regulation, PlantGene SilencingHydrolysisLigninMagnetic Resonance SpectroscopyOrgan SizePhylogenyAcidsCoenzyme A-TransferasesCoumaric Acidsferulic acidLigninXylanscell wall acylationferulic acidgrass evolutionhydroxycinnamateslignocellulosic feedstock

Identifiers

PMID29315591
PMCPMC5873385
OpenAlexW2784066800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.