Evidence map›Paper›PMID 29315406›Full record

ArticleNucleic acids research2018

Snapshots of a molecular swivel in action.

Caitlin S Trejo, Ronald S Rock, W Marshall Stark, Martin R Boocock, Phoebe A Rice

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Modeling Alternative Conformational States in CASP16.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Caitlin S TrejoDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA.
Ronald S RockDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA.
W Marshall StarkInstitute of Molecular Cell and Systems Biology, University of Glasgow, Glasgow G128QQ, UK.
Martin R BoocockInstitute of Molecular Cell and Systems Biology, University of Glasgow, Glasgow G128QQ, UK.
Phoebe A RiceDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA.
University of Chicago · USUniversity of Glasgow · GB

Funding

Graduate Program in Biophysical Sciences at the University of Chicago - Renewal 0T32EB009412 · NIBIB · UNIVERSITY OF CHICAGO · PI ENGEL, GREGORY S, SOSNICK, TOBIN R · 2009 to 2023
$4.9M
Allostery in myosins studied at the molecular levelR01GM078450 · NIGMS · UNIVERSITY OF CHICAGO · PI ROCK, RONALD S · 2006 to 2015
$2.8M
Biotechnology and Biological Sciences Research Council BB/E022200/1NIBIB NIH HHS T32 EB009412
6 · The paper itself

Abstract

Members of the serine family of site-specific recombinases exchange DNA strands via 180° rotation about a central protein-protein interface. Modeling of this process has been hampered by the lack of structures in more than one rotational state for any individual serine recombinase. Here we report crystal structures of the catalytic domains of four constitutively active mutants of the serine recombinase Sin, providing snapshots of rotational states not previously visualized for Sin, including two seen in the same crystal. Normal mode analysis predicted that each tetramer's lowest frequency mode (i.e. most accessible large-scale motion) mimics rotation: two protomers rotate as a pair with respect to the other two. Our analyses also suggest that rotation is not a rigid body movement around a single symmetry axis but instead uses multiple pivot points and entails internal motions within each subunit.

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayDNA NucleotidyltransferasesModels, MolecularMutationBacterial ProteinsDNA Nucleotidyltransferasessin protein, Staphylococcus aureus

Identifiers

PMID29315406
PMCPMC6007550
OpenAlexW2781545253

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.