Evidence map›Paper›PMID 29315358›Full record

ArticleDatabase : the journal of biological databases and curation2018

HTT-DB: new features and updates.

Bruno Reis Dotto, Evelise Leis Carvalho, Alexandre Freitas da Silva, Filipe Zimmer Dezordi, Paulo Marcos Pinto, Tulio de Lima Campos, Antonio Mauro Rezende, Gabriel da Luz Wallau

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Transposable Elements Co-Option in Genome Evolution and Gene Regulation.International journal of molecular sciences · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The mobilome of Drosophila incompta, a flower-breeding species: comparison of transposable element landscapes among generalist and specialist flies.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Article
  7. Characterization of a novelMobile DNA · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bruno Reis DottoCampus São Gabriel, Universidade Federal do Pampa, Avenida Antonio Trilha, 1847, São Gabriel, Rio Grande do Sul.
Evelise Leis CarvalhoPos Graduation in Biological Sciences, Universidade Federal do Pampa, Avenida Antonio Trilha, 1847, São Gabriel, Rio Grande do Sul.
Alexandre Freitas da SilvaPos Graduation in Biosciences and Health Biotechnology, Aggeu Magalhães Institute (IAM), Avenida Professor Moraes Rego, s/n, Recife, Pernambuco.
Filipe Zimmer DezordiCampus São Gabriel, Universidade Federal do Pampa, Avenida Antonio Trilha, 1847, São Gabriel, Rio Grande do Sul.
Paulo Marcos PintoCampus São Gabriel, Universidade Federal do Pampa, Avenida Antonio Trilha, 1847, São Gabriel, Rio Grande do Sul.
Tulio de Lima CamposBioinformatic Core, Aggeu Magalhães Institute (IAM), Avenida Professor Moraes Rego, s/n, Recife, Pernambuco.
Antonio Mauro RezendeDepartment of Microbiology, Aggeu Magalhães Institute (IAM), Avenida Professor Moraes Rego, s/n, Recife, Pernambuco.
Gabriel da Luz WallauDepartment of Entomology, Aggeu Magalhães Institute (IAM), Avenida Professor Moraes Rego, s/n, Recife, Pernambuco.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal Transfer (HT) of genetic material between species is a common phenomenon among Bacteria and Archaea species and several databases are available for information retrieval and data mining. However, little attention has been given to this phenomenon among eukaryotic species mainly due to the lower proportion of these events. In the last years, a vertiginous amount of new HT events involving eukaryotic species was reported in the literature, highlighting the need of a common repository to keep the scientific community up to date and describe overall trends. Recently, we published the first HT database focused on HT of transposable elements among eukaryotes: the Horizontal Transposon Transfer DataBase (http://lpa.saogabriel.unipampa.edu.br: 8080/httdatabase/). Here, we present new features and updates of this unique database: (i) its expansion to include virus-host exchange of genetic material, which we called Horizontal Virus Transfer (HVT) and (ii) the availability of a web server for HT detection, where we implemented the online version of vertical and horizontal inheritance consistence analysis (VHICA), an R package developed for HT detection. These improvements will help researchers to navigate through known HVT cases, take data-informed decision and export figures based on keywords searches. Moreover, the availability of the VHICA as an online tool will make this software easily reachable even for researchers with no or little computation knowledge as well as foster our capability to detect new HT events in a wide variety of taxa. (Database URL: http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase/).

Indexed as

Databases, GeneticDNA Transposable ElementsEukaryotaGene Transfer, HorizontalInternetTransduction, GeneticDNA Transposable Elements

Identifiers

PMID29315358
PMCPMC7206651

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.