Evidence map›Paper›PMID 29313979›Full record

ArticleInternational journal of cancer2018

Whole blood FPR1 mRNA expression predicts both non-small cell and small cell lung cancer.

Scott Morris, Anil Vachani, Harvey I Pass, William N Rom, Kirk Ryden, Glen J Weiss, D K Hogarth, George Runger, Donald Richards, Troy Shelton and 1 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 1 country.

Scott MorrisViomics, Phoenix, AZ.
Anil VachaniPenn Lung Center, University of Pennsylvania, Philadelphia, PA.
Harvey I PassThoracic Oncology, New York University Langone Medical Center, New York, NY.
William N RomThoracic Oncology, New York University Langone Medical Center, New York, NY.
Kirk RydenViomics, Phoenix, AZ.
Glen J WeissDepartment of Internal Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, AZ.ORCID 0000-0002-6067-597X
D K HogarthBronchoscopy and Minimally Invasive Diagnostics, University of Chicago Medicine, Chicago, IL.
George RungerSchool of Biomedical Diagnostics, Arizona State University, Tempe, AZ.
Donald RichardsMedical Oncology, Texas Oncology, Tyler, TX.
Troy SheltonViomics, Phoenix, AZ.
David W MalleryViomics, Phoenix, AZ.
Translational Genomics Research Institute · USNYU Langone Health · USArizona State University · USPenn Center for AIDS Research · USTexas Oncology · USUniversity of Arizona · USUniversity of Chicago · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

While long-term survival rates for early-stage lung cancer are high, most cases are diagnosed in later stages that can negatively impact survival rates. We aim to design a simple, single biomarker blood test for early-stage lung cancer that is robust to preclinical variables and can be readily implemented in the clinic. Whole blood was collected in PAXgene tubes from a training set of 29 patients, and a validation set of 260 patients, of which samples from 58 patients were prospectively collected in a clinical trial specifically for our study. After RNA was extracted, the expressions of FPR1 and a reference gene were quantified by an automated one-step Taqman RT-PCR assay. Elevated levels of FPR1 mRNA in whole blood predicted lung cancer status with a sensitivity of 55% and a specificity of 87% on all validation specimens. The prospectively collected specimens had a significantly higher 68% sensitivity and 89% specificity. Results from patients with benign nodules were similar to healthy volunteers. No meaningful correlation was present between our test results and any clinical characteristic other than lung cancer diagnosis. FPR1 mRNA levels in whole blood can predict the presence of lung cancer. Using this as a reflex test for positive lung cancer screening computed tomography scans has the potential to increase the positive predictive value. This marker can be easily measured in an automated process utilizing off-the-shelf equipment and reagents. Further work is justified to explain the source of this biomarker.

Indexed as

Biomarkers, TumorRNA, MessengerCarcinoma, Non-Small-Cell LungCase-Control StudiesComorbidityEarly Detection of CancerFemaleHumansLung NeoplasmsMaleNeoplasm StagingReceptors, Formyl PeptideROC CurveSmall Cell Lung CarcinomaBiomarkers, TumorFPR1 protein, humanReceptors, Formyl PeptideRNA, Messengerbloodearly detectionFPR1non-small cell lung cancersmall cell lung cancer

Identifiers

PMID29313979
PMCPMC5901395
OpenAlexW2808477444

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.