Evidence map›Paper›PMID 29312006›Full record

ArticleFrontiers in physiology2017

"Thinking" vs. "Talking": Differential Autocrine Inflammatory Networks in Isolated Primary Hepatic Stellate Cells and Hepatocytes under Hypoxic Stress.

Yoram Vodovotz, Richard L Simmons, Chandrashekhar R Gandhi, Derek Barclay, Bahiyyah S Jefferson, Chao Huang, Rami Namas, Fayten El-Dehaibi, Qi Mi, Timothy R Billiar and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. What's next for computational systems biology?Frontiers in systems biology · 2023
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yoram VodovotzDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Richard L SimmonsDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Chandrashekhar R GandhiDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Derek BarclayDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Bahiyyah S JeffersonDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Chao HuangDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Rami NamasDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Fayten El-DehaibiDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Qi MiDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Timothy R BilliarDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
Ruben ZamoraDepartment of Surgery, University of Pittsburgh, Pittsburgh, PA, United States.
University of Pittsburgh · USMcGowan Institute for Regenerative Medicine · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI James M Wells · 2007 to 2026
$24.4M
A Biohybrid Device for Regulating Inflammation in SepsisR01GM107231 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GERLACH, JOERG C., VODOVOTZ, YORAM · 2015 to 2017
$1.0M
Mechanisms of Liver InjuryI01BX001174 · VA · VETERANS HEALTH ADMINISTRATION · PI GANDHI, CHANDRASHEKHAR R · 2012 to 2023
–
BLRD VA I01 BX001174NIDDK NIH HHS P30 DK078392NIGMS NIH HHS R01 GM107231
6 · The paper itself

Abstract

We hypothesized that isolated primary mouse hepatic stellate cells (HSC) and hepatocytes (HC) would elaborate different inflammatory responses to hypoxia with or without reoxygenation. We further hypothesized that intracellular information processing ("thinking") differs from extracellular information transfer ("talking") in each of these two liver cell types. Finally, we hypothesized that the complexity of these autocrine responses might only be defined in the absence of other non-parenchymal cells or trafficking leukocytes. Accordingly, we assayed 19 inflammatory mediators in the cell culture media (CCM) and whole cell lysates (WCLs) of HSC and HC during hypoxia with and without reoxygenation. We applied a unique set of statistical and data-driven modeling techniques including Two-Way ANOVA, hierarchical clustering, Principal Component Analysis (PCA) and Network Analysis to define the inflammatory responses of these isolated cells to stress. HSC, under hypoxic and reoxygenation stresses, both expressed and secreted larger quantities of nearly all inflammatory mediators as compared to HC. These differential responses allowed for segregation of HSC from HC by hierarchical clustering. PCA suggested, and network analysis supported, the hypothesis that above a certain threshold of cellular stress, the inflammatory response becomes focused on a limited number of functions in both HSC and HC, but with distinct characteristics in each cell type. Network analysis of separate extracellular and intracellular inflammatory responses, as well as analysis of the combined data, also suggested the presence of more complex inflammatory "talking" (but not "thinking") networks in HSC than in HC. This combined network analysis also suggested an interplay between intracellular and extracellular mediators in HSC under more conditions than that observed in HC, though both cell types exhibited a qualitatively similar phenotype under hypoxia/reoxygenation. Our results thus suggest that a stepwise series of computational and statistical analyses may help decipher how cells respond to environmental stresses, both within the cell and in its secretory products, even in the absence of cooperation from other cells in the liver.

Indexed as

cytokineshepatocytehypoxialiverstellate cellsystems biology

Identifiers

PMID29312006
PMCPMC5743931
OpenAlexW2779068627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.