Evidence map›Paper›PMID 29311651›Full record

ArticleMolecular psychiatry2019

Identification of a novel gene regulating amygdala-mediated fear extinction.

Ozge Gunduz-Cinar, Emma Brockway, Lauren Lederle, Troy Wilcox, Lindsay R Halladay, Ying Ding, Hyunjung Oh, Erica F Busch, Katie Kaugars, Shaun Flynn and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 39 citations in OpenAlex.

  1. Phospholipase A2 downregulates inhibitory transmission in the amygdala and impairs fear extinction.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
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  19. Dorsolateral striatum engagement during reversal learning.Learning & memory (Cold Spring Harbor, N.Y.) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Ozge Gunduz-CinarLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA. ozge.gunduzcinar@nih.gov.
Emma BrockwayLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Lauren LederleLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Troy WilcoxThe Jackson Laboratory, Bar Harbor, ME, USA.
Lindsay R HalladayLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Ying DingJoint Carnegie Mellon University-University of Pittsburgh Ph.D. Program in Computational Biology, Pittsburgh, PA, USA.
Hyunjung OhDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, PA, USA.
Erica F BuschLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Katie KaugarsLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Shaun FlynnLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Aaron LimogesLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Olena BukaloLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Kathryn P MacPhersonLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Sophie MasneufLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Courtney PinardLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA.
Etienne SibilleDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, PA, USA.
Elissa J CheslerThe Jackson Laboratory, Bar Harbor, ME, USA.ORCID http://orcid.org/0000-0002-5642-5062
Andrew HolmesLaboratory of Behavioral and Genomic Neuroscience, National Institute on Alcohol Abuse and Alcoholism, NIH, Bethesda, MD, USA. andrew.holmes@nih.gov.
National Institute on Alcohol Abuse and Alcoholism · USCentre for Addiction and Mental Health · CAJackson Laboratory · USUniversity of Pittsburgh · US

Funding

Mouse models of stress disorders and addictionZIAAA000411 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI HOLMES, ANDREW · 2009 to 2025
$37.7M
Project 5: Circadian RhythmsP50DA039841 · NIDA · JACKSON LABORATORY · PI Elissa J Chesler · 2016 to 2026
$26.2M
Discovery of Addiction-Related Genes with Advanced Mouse ResourcesR01DA037927 · NIDA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2015 to 2025
$8.1M
Data Structures, Algorithms and Tools for Ontological DiscoveryR01AA018776 · NIAAA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2010 to 2019
$3.9M
Mouse models of the early life origins of stress disordeZ01AA000411 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI HOLMES, ANDREW · 2004 to 2008
$1.9M
Genomic Characterization in Depression and Suicide.K01MH067721 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SIBILLE, ETIENNE L · 2003 to 2007
$793k
Altered Gene Expression in Antidepressant TreatmentF32MH063559 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIBILLE, ETIENNE L · 2001 to 2002
$86k
NEUROBIOLOGY OF ANXIETY IN 5HT1A KNOCKOUT MICEF31MH012050 · NIMH · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI SIBILLE, ETIENNE L · 1998 to 1998
–
Intramural NIH HHS Z01 AA000411Intramural NIH HHS Z99 AA999999Intramural NIH HHS ZIA AA000411NIAAA NIH HHS R01 AA018776NIAAA NIH HHS Z99 AA999999NIDA NIH HHS P50 DA039841NIDA NIH HHS R01 DA037927NIMH NIH HHS F31 MH012050NIMH NIH HHS F32 MH063559NIMH NIH HHS K01 MH067721NULL Z01 AA000411-04NULL Z01 AA000411-05NULL ZIA AA000411-06NULL ZIA AA000411-07NULL ZIA AA000411-08NULL ZIA AA000411-09NULL ZIA AA000411-10NULL ZIA AA000411-11NULL ZIA AA000411-12NULL ZIA AA000411-13NULL ZIA AA000411-14
6 · The paper itself

Abstract

Recent years have seen advances in our understanding of the neural circuits associated with trauma-related disorders, and the development of relevant assays for these behaviors in rodents. Although inherited factors are known to influence individual differences in risk for these disorders, it has been difficult to identify specific genes that moderate circuit functions to affect trauma-related behaviors. Here, we exploited robust inbred mouse strain differences in Pavlovian fear extinction to uncover quantitative trait loci (QTL) associated with this trait. We found these strain differences to be resistant to developmental cross-fostering and associated with anatomical variation in basolateral amygdala (BLA) perineuronal nets, which are developmentally implicated in extinction. Next, by profiling extinction-driven BLA expression of QTL-linked genes, we nominated Ppid (peptidylprolyl isomerase D, a member of the tetratricopeptide repeat (TPR) protein family) as an extinction-related candidate gene. We then showed that Ppid was enriched in excitatory and inhibitory BLA neuronal populations, but at lower levels in the extinction-impaired mouse strain. Using a virus-based approach to directly regulate Ppid function, we demonstrated that downregulating BLA-Ppid impaired extinction, while upregulating BLA-Ppid facilitated extinction and altered in vivo neuronal extinction encoding. Next, we showed that Ppid colocalized with the glucocorticoid receptor (GR) in BLA neurons and found that the extinction-facilitating effects of Ppid upregulation were blocked by a GR antagonist. Collectively, our results identify Ppid as a novel gene involved in regulating extinction via functional actions in the BLA, with possible implications for understanding genetic and pathophysiological mechanisms underlying risk for trauma-related disorders.

Indexed as

AmygdalaAnimalsBasolateral Nuclear ComplexCyclophilinsExtinction, PsychologicalFearMaleMemoryMiceMice, Inbred C57BLNeuronsPrefrontal CortexQuantitative Trait LociTetratricopeptide RepeatCyclophilins

Identifiers

PMID29311651
PMCPMC6035889
OpenAlexW2784299524

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.