Evidence map›Paper›PMID 29310664›Full record

ArticleVirology journal2018

Pathogenicity of rice yellow mottle virus and screening of rice accessions from the Central African Republic.

Regis Dimitri Sokpe Longue, Valentin Stanislas Edgar Traore, Innocent Zinga, Maxwell Darko Asante, Zakaria Bouda, James Bouma Neya, Nicolas Barro, Oumar Traore

Abstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Regis Dimitri Sokpe LongueLaboratory of Biological and Agronomic Sciences for Development (LaSBAD), Life Science Department, University of Bangui, BP, 908, Bangui, Central African Republic. regislongue@yahoo.fr.
Valentin Stanislas Edgar TraoreInstitute of Environment and Agricultural Research (INERA), Ouagadougou, 01 BP 476, Burkina Faso.
Innocent ZingaLaboratory of Biological and Agronomic Sciences for Development (LaSBAD), Life Science Department, University of Bangui, BP, 908, Bangui, Central African Republic.
Maxwell Darko AsanteConcil for Scientific and Industrial Research -Crop Research Institute, CSIR-CRI, P.O. Box 3785, Kumasi, Ghana.
Zakaria BoudaInstitute of Environment and Agricultural Research (INERA), Ouagadougou, 01 BP 476, Burkina Faso.
James Bouma NeyaInstitute of Environment and Agricultural Research (INERA), Ouagadougou, 01 BP 476, Burkina Faso.
Nicolas BarroDepartment of Biochemistry and Microbiology, University of Ouagadougou I-Professor Joseph Ki-Zerbo, Ouagadougou, Burkina Faso.
Oumar TraoreInstitute of Environment and Agricultural Research (INERA), Ouagadougou, 01 BP 476, Burkina Faso.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRice yellow mottle virus (RYMV) of the genus Sobemovirus is the most important viral pathogen of rice causing more damage to rice crop in Sub Saharan Africa. The aim of this study was to conduct pathogenic characterization of RYMV isolates from the Central African Republic (CAR) and to screen commonly cultivated rice accessions in the country for resistance/tolerance to the virus.

methodsThe pathogenicity of RYMV isolates was studied by mechanical inoculation with comparison to differential rice lines highly resistant to RYMV available at the Institute of Environment and Agricultural Research (INERA) in Burkina Faso. To screen commonly cultivated rice accessions in CAR, characterized RYMV isolates from the country were used as inoculum sources. Resistant breaking (RB) isolates were used to prepare RB-inoculum, whereas non-resistant breaking isolates (nRB) were used for nRB-inoculum.

resultsOverall 102 isolates used in this study, 29.4% were able to overcome the high resistance genes in the rice cultivars Gigante and Tog7291. All isolates were distributed within three distinct pathogenic profiles. The first profile constituted of 6.9% of the isolates was able to break down the resistance in rice cultivar Gigante only. The second pathogenic profile made of 19.6% of isolates was able to infect Tog7291 only. The third profile, 2.9% of isolates overcame simultaneously resistance genes in both rice cultivars Gigante and Tog7291. Out of isolates able to break down the resistance gene in cultivar Gigante, a single isolate was found to be non-infectious to the susceptible control IR64. Data from screening showed that all accessions were susceptible to RYMV, although IRAT213 was found to be partially resistant to both nRB-inoculum and RB-inoculum.

conclusionThe present study can be considered as the first in the Central African Republic, it gives a caution on the high risk of RYMV damage to rice production in the country. Beside, skills of pathogenic profiles of RYMV isolates will contribute to better disease management.

Indexed as

Biological EvolutionCentral African RepublicDisease ResistanceHost-Pathogen InteractionsOryzaPhenotypePlant DiseasesPlant VirusesVirulencePathogenicity, rice accessionsResistance breaking isolatesRYMV

Identifiers

PMID29310664
PMCPMC5759187

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.