Evidence map›Paper›PMID 29309053›Full record

ArticleNature chemical biology2018

Employing a biochemical protecting group for a sustainable indigo dyeing strategy.

Tammy M Hsu, Ditte H Welner, Zachary N Russ, Bernardo Cervantes, Ramya L Prathuri, Paul D Adams, John E Dueber

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
17.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 212 citations in OpenAlex.

  1. Article
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  5. Developing Quorum Sensing-Based Collaborative Dynamic Control System in Halomonas TD01.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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  11. Study of Woad (Molecules (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tammy M HsuDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.ORCID 0000-0002-2508-5704
Ditte H WelnerJoint BioEnergy Institute, Emeryville, California, USA.
Zachary N RussDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.ORCID 0000-0002-0571-8252
Bernardo CervantesDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.
Ramya L PrathuriDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.
Paul D AdamsDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.
John E DueberDepartment of Bioengineering, University of California, Berkeley, Berkeley, California, USA.ORCID 0000-0001-8404-7153
University of California, Berkeley · USLawrence Berkeley National Laboratory · US

Funding

Interdepartmental Biotechnology Training ProgramT32GM008334 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WITTRUP, KARL DANE · 1989 to 2018
$15.2M
NIGMS NIH HHS T32 GM008334
6 · The paper itself

Abstract

Indigo is an ancient dye uniquely capable of producing the signature tones in blue denim; however, the dyeing process requires chemical steps that are environmentally damaging. We describe a sustainable dyeing strategy that not only circumvents the use of toxic reagents for indigo chemical synthesis but also removes the need for a reducing agent for dye solubilization. This strategy utilizes a glucose moiety as a biochemical protecting group to stabilize the reactive indigo precursor indoxyl to form indican, preventing spontaneous oxidation to crystalline indigo during microbial fermentation. Application of a β-glucosidase removes the protecting group from indican, resulting in indigo crystal formation in the cotton fibers. We identified the gene coding for the glucosyltransferase PtUGT1 from the indigo plant Polygonum tinctorium and solved the structure of PtUGT1. Heterologous expression of PtUGT1 in Escherichia coli supported high indican conversion, and biosynthesized indican was used to dye cotton swatches and a garment.

Indexed as

Colorbeta-GlucosidaseBioreactorsCatalytic DomainCrystallography, X-RayDimerizationDNA, ComplementaryEscherichia coliFermentationGene Expression ProfilingGene LibraryGlucosidesGlucosyltransferasesIndigo CarmineIndolesPlant Leavesbeta-GlucosidaseDNA, ComplementaryGlucosidesGlucosyltransferasesindican, plantIndigo CarmineIndolesindoxylindoxyl-UDPG-glucosyltransferasePlant ProteinsRecombinant Proteins

Identifiers

PMID29309053
PMCPMC5866135
OpenAlexW2783523019

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.