Evidence map›Paper›PMID 29308445›Full record

ArticleJournal of the Endocrine Society2017

Utility of Population-Level DNA Sequence Data in the Diagnosis of Hereditary Endocrine Disease.

Paul J Newey, Jonathan N Berg, Kaixin Zhou, Colin N A Palmer, Rajesh V Thakker

Open access · goldAbstract read
In one paragraph

Article in Journal of the Endocrine Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Genetic approaches to metabolic bone diseases.British journal of clinical pharmacology · 2019
    Review
  7. Article
  8. Discovery of new susceptibility genes: proceed cautiously.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  9. Journal of medical genetics · 2018
    Article
  10. Pathogenicity and Penetrance of GermlineJournal of the Endocrine Society · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Paul J NeweyDivision of Molecular & Clinical Medicine, Ninewells Hospital & Medical School, University of Dundee, Dundee, DD1 9SY, Scotland, United Kingdom.
Jonathan N BergClinical Genetics, Ninewells Hospital & Medical School, University of Dundee, Dundee, DD1 9SY Scotland, United Kingdom.
Kaixin ZhouDivision of Molecular & Clinical Medicine, Ninewells Hospital & Medical School, University of Dundee, Dundee, DD1 9SY, Scotland, United Kingdom.
Colin N A PalmerDivision of Molecular & Clinical Medicine, Ninewells Hospital & Medical School, University of Dundee, Dundee, DD1 9SY, Scotland, United Kingdom.
Rajesh V ThakkerAcademic Endocrine Unit, Radcliffe Department of Medicine, University of Oxford, Oxford, OX3 7LJ United Kingdom.
University of Dundee · GBNinewells Hospital · GBUniversity of Oxford · GB

Funding

Chief Scientist Office SCAF/15/01Medical Research Council G1000467Wellcome Trust
6 · The paper itself

Abstract

contextGenetic testing is increasingly used for clinical diagnosis, although variant interpretation presents a major challenge because of high background rates of rare coding-region variation, which may contribute to inaccurate estimates of variant pathogenicity and disease penetrance.

objectiveTo use the Exome Aggregation Consortium (ExAC) data set to determine the background population frequencies of rare germline coding-region variants in genes associated with hereditary endocrine disease and to evaluate the clinical utility of these data. DESIGN SETTING

participantsCumulative frequencies of rare nonsynonymous single-nucleotide variants were established for 38 endocrine disease genes in 60,706 unrelated control individuals. The utility of gene-level and variant-level metrics of tolerability was assessed, and the pathogenicity and penetrance of germline variants previously associated with endocrine disease evaluated.

resultsThe frequency of rare coding-region variants differed markedly between genes and was correlated with the degree of evolutionary conservation. Genes associated with dominant monogenic endocrine disorders typically harbored fewer rare missense and/or loss-of-function variants than expected.

conclusionsQuantifying the frequency and spectrum of rare variation using population-level sequence data facilitates improved estimates of variant pathogenicity and penetrance and should be incorporated into the clinical decision-making algorithm when undertaking genetic testing.

Indexed as

ExACgenetic testinggermlinemutationpenetrancesingle nucleotide variant

Identifiers

PMID29308445
PMCPMC5740525
OpenAlexW2769040360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.