Evidence map›Paper›PMID 29306326›Full record

ArticleBMC genomics2018

Polyketide synthases of Diaporthe helianthi and involvement of DhPKS1 in virulence on sunflower.

Michelina Ruocco, Riccardo Baroncelli, Santa Olga Cacciola, Catello Pane, Maurilia Maria Monti, Giuseppe Firrao, Mariarosaria Vergara, Gaetano Magnano di San Lio, Giovanni Vannacci, Felice Scala

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  3. A putative terpene cyclase gene (Frontiers in microbiology · 2023
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  4. Plants (Basel, Switzerland) · 2022
    Review
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  8. Fungal Extracellular Vesicles in Pathophysiology.Sub-cellular biochemistry · 2021
    Article
  9. Characterization ofPlants (Basel, Switzerland) · 2020
    Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

Michelina RuoccoIstituto per la Protezione Sostenibile delle Piante, CNR-IPSP, Via Università 133, 80055, Portici (Naples), Italy. michelina.ruocco@ipsp.cnr.it.ORCID 0000-0002-8322-3503
Riccardo BaroncelliUniversité de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280, Plouzané, France.
Santa Olga CacciolaDipartimento di Agricoltura, Alimentazione e Ambiente, Università di Catania, 95123, Catania, Italy.
Catello PaneConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria, Centro di ricerca Orticoltura e Florovivaismo, sede di Pontecagnano, via Cavalleggeri 25, 84098, Pontecagnano (Salerno), Italy.
Maurilia Maria MontiIstituto per la Protezione Sostenibile delle Piante, CNR-IPSP, Via Università 133, 80055, Portici (Naples), Italy.
Giuseppe FirraoDipartimento di Scienze AgroAlimentari, Ambientali e Animali, Università di Udine, via Scienze, Udine, Italy.
Mariarosaria VergaraScuola Normale Superiore di Pisa, 56126, Pisa, Italy.
Gaetano Magnano di San LioDipartimento di Gestione dei Sistemi Agrari e Forestali, Università Mediterranea di Reggio Calabria, 89061, Reggio Calabria, Italy.
Giovanni VannacciDipartimento di Scienze Agrarie, Alimentari e Agro-Ambientali, Università di Pisa, 56124, Pisa, Italy.
Felice ScalaIstituto per la Protezione Sostenibile delle Piante, CNR-IPSP, Via Università 133, 80055, Portici (Naples), Italy.
University of Pisa · ITInstitute for Sustainable Plant Protection · ITCentro di Ricerca per l’Orticoltura · ITUniversité de Bretagne Occidentale · FRUniversity of Catania · ITUniversity of Reggio Calabria · ITUniversity of Udine · IT

Funding

Regione Campania B25B09000080007Regione Campania B25C13000290007
6 · The paper itself

Abstract

backgroundThe early phases of Diaporthe helianthi pathogenesis on sunflower are characterized by the production of phytotoxins that may play a role in host colonisation. In previous studies, phytotoxins of a polyketidic nature were isolated and purified from culture filtrates of virulent strains of D. helianthi isolated from sunflower. A highly aggressive isolate (7/96) from France contained a gene fragment of a putative nonaketide synthase (lovB) which was conserved in a virulent D. helianthi population.

resultsIn order to investigate the role of polyketide synthases in D. helianthi 7/96, a draft genome of this isolate was examined. We were able to find and phylogenetically analyse 40 genes putatively coding for polyketide synthases (PKSs). Analysis of their domains revealed that most PKS genes of D. helianthi are reducing PKSs, whereas only eight lacked reducing domains. Most of the identified PKSs have orthologs shown to be virulence factors or genetic determinants for toxin production in other pathogenic fungi. One of the genes (DhPKS1) corresponded to the previously cloned D. helianthi lovB gene fragment and clustered with a nonribosomal peptide synthetase (NRPS) -PKS hybrid/lovastatin nonaketide like A. nidulans LovB. We used DhPKS1 as a case study and carried out its disruption through Agrobacterium-mediated transformation in the isolate 7/96. D. helianthi DhPKS1 deleted mutants were less virulent to sunflower compared to the wild type, indicating a role for this gene in the pathogenesis of the fungus.

conclusionThe PKS sequences analysed and reported here constitute a new genomic resource that will be useful for further research on the biology, ecology and evolution of D. helianthi and generally of fungal plant pathogens.

Indexed as

Host-Pathogen InteractionsVirulenceAgrobacterium tumefaciensAscomycotaGene SilencingGenetic EngineeringGenome, FungalHelianthusPhylogenyPlant DiseasesPolyketide SynthasesPolyketide SynthasesDiaporthe helianthiPathogen virulence, toxinsPlant pathogenPolyketide synthases

Identifiers

PMID29306326
PMCPMC5756342
OpenAlexW2782196282

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.