Evidence map›Paper›PMID 29306028›Full record

ArticleMicrobes and infection2018

Discovery of a unique Mycobacterium tuberculosis protein through proteomic analysis of urine from patients with active tuberculosis.

Nira Pollock, Rakesh Dhiman, Nada Daifalla, Maha Farhat, Antonio Campos-Neto

Abstract read
In one paragraph

Article in Microbes and infection, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nira PollockBoston Children's Hospital and Harvard Medical School, Boston MA, USA.
Rakesh DhimanThe Forsyth Institute, Cambridge MA, USA.
Nada DaifallaThe Forsyth Institute, Cambridge MA, USA.
Maha FarhatHarvard Medical School, and Massachusetts General Hospital, Boston, MA, USA.
Antonio Campos-NetoThe Forsyth Institute, Cambridge MA, USA. Electronic address: antonio.campos@tufts.edu.

Funding

TB Vaccine Candidates Found in Patients' Bodily Fluids and Murine MHC-1 MoleculeR01AI076425 · NIAID · ADA FORSYTH INSTITUTE, INC. · PI CAMPOS-NETO, ANTONIO · 2008 to 2012
$2.9M
New Tools for the interpretation of Pathogen Genomic Data with a focus on Mycobacterium tuberculosisK01ES026835 · NIEHS · MASSACHUSETTS GENERAL HOSPITAL · PI FARHAT, MAHA · 2015 to 2019
$1.1M
Development and Evaluation of a Novel Diagnostic Test for Active TuberculosisK23AI074638 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI POLLOCK, NIRA · 2008 to 2012
$633k
NIAID NIH HHS K23 AI074638NIAID NIH HHS R01 AI076425NIEHS NIH HHS K01 ES026835
6 · The paper itself

Abstract

Identification of pathogen-specific biomarkers present in patients' serum or urine samples can be a useful diagnostic approach. In efforts to discover Mycobacterium tuberculosis (Mtb) biomarkers we identified by mass spectroscopy a unique 21-mer Mtb peptide sequence (VVLGLTVPGGVELLPGVALPR) present in the urines of TB patients from Zimbabwe. This peptide has 100% sequence homology with the protein TBCG_03312 from the C strain of Mtb (a clinical isolate identified in New York, NY, USA) and 95% sequence homology with Mtb oxidoreductase (MRGA423_21210) from the clinical isolate MTB423 (identified in Kerala, India). Alignment of the genes coding for these proteins show an insertion point mutation relative to Rv3368c of the reference H37Rv strain, which generated a unique C-terminus with no sequence homology with any other described protein. Phylogenetic analysis utilizing public sequence data shows that the insertion mutation is apparently a rare event. However, sera from TB patients from distinct geographical areas of the world (Peru, Vietnam, and South Africa) contain antibodies that recognize a purified recombinant C-terminus of the protein, thus suggesting a wider distribution of isolates that produce this protein.

Indexed as

ProteomicsAmino Acid SequenceAntibodies, BacterialBacterial ProteinsBiomarkersCluster AnalysisHumansMycobacterium tuberculosisOxidoreductasesPeptide FragmentsTuberculosisAntibodies, BacterialBacterial ProteinsBiomarkersOxidoreductasesPeptide FragmentsAntigenuriaC strainMycobacterium tuberculosis

Identifiers

PMID29306028
PMCPMC5946903

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.