Evidence map›Paper›PMID 29302342›Full record

ArticleNPJ Regenerative medicine2017

A systems biology approach to studying the molecular mechanisms of osteoblastic differentiation under cytokine combination treatment.

Hua Tan, Ruoying Chen, Wenyang Li, Weiling Zhao, Yuanyuan Zhang, Yunzhi Yang, Jing Su, Xiaobo Zhou

Open access · goldAbstract read
In one paragraph

Article in NPJ Regenerative medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Development of PLGA-PEG-COOH and gelatin-based microparticles dual delivery system and E-beam sterilization effects for controlled release of BMP-2 and IGF-1.Particle & particle systems characterization : measurement and description of particle properties and behavior in powders and other disperse systems · 2020
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hua Tan *Center for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Ruoying Chen *Center for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Wenyang Li *Center for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Weiling ZhaoCenter for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Yuanyuan ZhangInstitute of Regenerative Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Yunzhi YangDepartment of Orthopedic Surgery, Stanford University, Stanford, CA 94305 USA.
Jing SuCenter for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Xiaobo ZhouCenter for Bioinformatics & Systems Biology, Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.
Wake Forest University · USStanford University · US

Funding

Microengineered Osteons for Bone Tissue EngineeringR01AR057837 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI YANG, YUNZHI · 2010 to 2018
$5.1M
Systems Modeling Guided Bone regenerationU01AR069395 · NIAMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI YANG, YUNZHI, ZHOU, XIAOBO · 2016 to 2021
$3.4M
Modelling the Growth of the MIC Niche at the System LevelU01CA166886 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ZHOU, XIAOBO · 2012 to 2016
$2.2M
Engineering Vascularized Bone Tissues By Microfabrication And ScaffoldingR01DE021468 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI YANG, YUNZHI · 2011 to 2014
$1.8M
System Biology Approach for Signaling Transduction Study of Complex PhenotypesR01LM010185 · NLM · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ZHOU, XIAOBO, ZU, YOULI · 2009 to 2012
$1.3M
itNETZ: Integrative and Translational Network-based Cellular Signature AnalyzerU01HL111560 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ZHOU, XIAOBO · 2011 to 2013
$1.1M
NCI NIH HHS U01 CA166886NHLBI NIH HHS U01 HL111560NIAMS NIH HHS R01 AR057837NIAMS NIH HHS U01 AR069395NIDCR NIH HHS R01 DE021468NLM NIH HHS R01 LM010185
6 · The paper itself

Abstract

Recent studies revealed that sequential release of bone morphogenetic protein 2 and insulin-like growth factor 1 plays an important role in osteogenic process, suggesting that cytokines bone morphogenetic protein 2 and insulin-like growth factor 1 function in a time-dependent manner. However, the specific molecular mechanisms underlying these observations remained elusive, impeding the elaborate manipulation of cytokine sequential delivery in tissue repair. The aim of this study was to identify the key relevant pathways and processes regulating bone morphogenetic protein 2/insulin-like growth factor 1-mediated osteoblastic differentiation. Based on the microarray and proteomics data, and differentiation/growth status of mouse bone marrow stromal cells, we constructed a multiscale systems model to simulate the bone marrow stromal cells lineage commitment and bone morphogenetic protein 2 and insulin-like growth factor 1-regulated signaling dynamics. The accuracy of our model was validated using a set of independent experimental data. Our study reveals that, treatment of bone marrow stromal cells with bone morphogenetic protein 2 prior to insulin-like growth factor 1 led to the activation of transcription factor Runx2 through TAK1-p38 MAPK and SMAD1/5 signaling pathways and initiated the lineage commitment of bone marrow stromal cells. Delivery of insulin-like growth factor 1 four days after bone morphogenetic protein 2 treatment optimally activated transcription factors osterix and β-catenin through ERK and AKT pathways, which are critical to preosteoblast maturity. Our systems biology approach is expected to provide technical and scientific support in optimizing therapeutic scheme to improve osteogenesis/bone regeneration and other essential biological processes.

Identifiers

PMID29302342
PMCPMC5677954
OpenAlexW2592523186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.