Evidence map›Paper›PMID 29302295›Full record

ArticleComparative cytogenetics2017

DRAWID: user-friendly java software for chromosome measurements and idiogram drawing.

Ilya Kirov, Ludmila Khrustaleva, Katrijn Van Laere, Alexander Soloviev, Sofie Meeus, Dmitry Romanov, Igor Fesenko

Abstract read
In one paragraph

Article in Comparative cytogenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  5. Translocations and inversions: major chromosomal rearrangements during Vigna (Leguminosae) evolution.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  6. Article
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  8. Article
  9. The Control of the Crossover Localization in Allium.International journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Integrating Genetic and Chromosome Maps ofInternational journal of molecular sciences · 2022
    Article
  13. Oligo-FISH barcode in beans: a new chromosome identification system.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  14. Chromosomal Characterization ofInternational journal of molecular sciences · 2021
    Article
  15. Article
  16. Article
  17. Imaging approaches for chromosome structures.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Review
  18. Article
  19. Article
  20. A universal chromosome identification system for maize and wild Zea species.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ilya KirovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Laboratory of proteomics, Miklukho-Maklaya, 16/10,117997, Moscow, Russia.
Ludmila KhrustalevaRussian State Agrarian University-MTAA, Timiryazevskay str. 49, 127550 Moscow, Russia.
Katrijn Van LaereInstitute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090 Melle, Belgium.
Alexander SolovievRussian State Agrarian University-MTAA, Timiryazevskay str. 49, 127550 Moscow, Russia.
Sofie MeeusInstitute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090 Melle, Belgium.
Dmitry RomanovRussian State Agrarian University-MTAA, Timiryazevskay str. 49, 127550 Moscow, Russia.
Igor FesenkoShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Laboratory of proteomics, Miklukho-Maklaya, 16/10,117997, Moscow, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An idiogram construction following chromosome measurements is a versatile tool for cytological, cytogenetic and phylogenetic studies. The information on chromosome length, centromere index and position of cytogenetic landmarks along with modern techniques (e.g. genomic and fluorescence in situ hybridization, banding, chromosome painting) can help to shed light on genome constitution, chromosome rearrangements and evolution. While idiogram construction is a routine task there are only few freely available programs that can perform chromosome measurements and no software for simultaneous measuring of chromosome parameters, chromosomal landmark and FISH signal positions and idiogram construction. To fill this gap, we developed DRAWID (DRAWing IDiogram), java-based cross-platforming program for chromosome analysis and idiogram construction. DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis. The output of the program is Microsoft XL table and publish-ready idiogram picture. DRAWID and the manual for its use are freely available on the website at: http://www.drawid.xyz.

Indexed as

chromosome softwareidiogramKaryotypingplant cytogenetics

Identifiers

PMID29302295
PMCPMC5740402

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.