Evidence map›Paper›PMID 29301376›Full record

ArticleMolecules (Basel, Switzerland)2018

SistematX, an Online Web-Based Cheminformatics Tool for Data Management of Secondary Metabolites.

Marcus Tullius Scotti, Chonny Herrera-Acevedo, Tiago Branquinho Oliveira, Renan Paiva Oliveira Costa, Silas Yudi Konno de Oliveira Santos, Ricardo Pereira Rodrigues, Luciana Scotti, Fernando Batista Da-Costa

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Latin American Natural Product Database (LANaPDB): An Update.Journal of chemical information and modeling · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marcus Tullius ScottiPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil. mtscotti@gmail.com.ORCID 0000-0003-4863-8057
Chonny Herrera-AcevedoPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil. chonny622@gmail.com.ORCID 0000-0002-6220-9091
Tiago Branquinho OliveiraDepartment of Pharmacy, Federal University of Sergipe (UFS-SE), Av. Marechal Rondon s/n, Jd. Rosa Elze, São Cristóvão 49100-000, SE, Brazil. tiago.branquinho@ufs.br.ORCID 0000-0001-7578-9497
Renan Paiva Oliveira CostaPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil. renan0paiva@hotmail.com.
Silas Yudi Konno de Oliveira SantosPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil.
Ricardo Pereira RodriguesPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil. ricardo.p.rodrigues@ufes.br.
Luciana ScottiPostgraduate Program in Natural Products and Synthetic Bioactive, IPeFarM, Federal University of Paraíba, Campus I, Cidade Universitária, João Pessoa 58051-900, PB, Brazil. luciana.scotti@gmail.com.ORCID 0000-0003-1866-4107
Fernando Batista Da-CostaAsterBioChem Research Team, Laboratory of Pharmacognosy, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo (USP), Av. do Café s/n, Ribeirão Preto 14040-903, SP, Brazil. febcosta@fcfrp.usp.br.ORCID 0000-0002-2345-5804

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The traditional work of a natural products researcher consists in large part of time-consuming experimental work, collecting biota to prepare and analyze extracts and to identify innovative metabolites. However, along this long scientific path, much information is lost or restricted to a specific niche. The large amounts of data already produced and the science of metabolomics reveal new questions: Are these compounds known or new? How fast can this information be obtained? To answer these and other relevant questions, an appropriate procedure to correctly store information on the data retrieved from the discovered metabolites is necessary. The SistematX (http://sistematx.ufpb.br) interface is implemented considering the following aspects: (a) the ability to search by structure, SMILES (Simplified Molecular-Input Line-Entry System) code, compound name and species; (b) the ability to save chemical structures found by searching; (c) compound data results include important characteristics for natural products chemistry; and (d) the user can find specific information for taxonomic rank (from family to species) of the plant from which the compound was isolated, the searched-for molecule, and the bibliographic reference and Global Positioning System (GPS) coordinates. The SistematX homepage allows the user to log into the data management area using a login name and password and gain access to administration pages. In this article, we introduced a modern and innovative web interface for the management of a secondary metabolite database. With its multiplatform design, it is able to be properly consulted via the internet and managed from any accredited computer. The interface provided by SistematX contains a wealth of useful information for the scientific community about natural products, highlighting the locations of species from which compounds are isolated.

Indexed as

Secondary MetabolismSoftwareClassificationComputational BiologyDatabases, FactualMetabolomicsMolecular StructurePlantsUser-Computer Interfacedata managementonline web-based toolsecondary metabolitesSistematX

Identifiers

PMID29301376
PMCPMC6017134

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.