Evidence map›Paper›PMID 29301074›Full record

ArticleACS synthetic biology2018

Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously.

Sumana Venkat, Jourdan Sturges, Alleigh Stahman, Caroline Gregory, Qinglei Gan, Chenguang Fan

Abstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Bacterial protein acetylation: mechanisms, functions, and methods for study.Frontiers in cellular and infection microbiology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Update of the Pyrrolysyl-tRNA Synthetase/tRNAJournal of bacteriology · 2023
    Review
  13. "Not-so-popular" orthogonal pairs in genetic code expansion.Protein science : a publication of the Protein Society · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sumana VenkatDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.
Jourdan SturgesDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.
Alleigh StahmanDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.
Caroline GregoryDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.
Qinglei GanDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.
Chenguang FanDepartment of Chemistry and Biochemistry, ‡Cell and Molecular Biology Program, and §Department of Biological Sciences, University of Arkansas , Fayetteville, Arkansas 72701, United States.ORCID 0000-0003-0662-1185
University of Arkansas at Fayetteville · US

Funding

Expanding the genetic code in SalmonellaR21AI119813 · NIAID · YALE UNIVERSITY · PI FAN, CHENGUANG · 2015 to 2016
$424k
NIAID NIH HHS R21 AI119813
6 · The paper itself

Abstract

Post-translational modifications (PTMs) play important roles in regulating a variety of biological processes. To facilitate PTM studies, the genetic code expansion strategy has been utilized to cotranslationally incorporate individual PTMs such as acetylation and phosphorylation into proteins at specific sites. However, recent studies have demonstrated that PTMs actually work together to regulate protein functions and structures. Thus, simultaneous incorporation of multiple distinct PTMs into one protein is highly desirable. In this study, we utilized the genetic incorporation systems of phosphoserine and acetyllysine to install both phosphorylation and acetylation into target proteins simultaneously in Escherichia coli. And we used this system to study the effect of coexisting acetylation and phosphorylation on malate dehydrogenase, demonstrating a practical application of this system in biochemical studies. Furthermore, we tested the mutual orthogonality of three widely used genetic incorporation systems, indicating the possibility of incorporating three distinct PTMs into one protein simultaneously.

Indexed as

Escherichia coliEscherichia coli ProteinsMalate DehydrogenaseProtein Processing, Post-TranslationalAcetylationPhosphorylationEscherichia coli ProteinsMalate Dehydrogenaseacetylationgenetic code expansionnoncanonical amino acidphosphorylationpost-translational modification

Identifiers

PMID29301074
PMCPMC5815919
OpenAlexW2782374143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.