Evidence map›Paper›PMID 29300935›Full record

ArticleJournal of experimental botany2018

Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana.

Christopher G Oakley, Linda Savage, Samuel Lotz, G Rudd Larson, Michael F Thomashow, David M Kramer, Douglas W Schemske

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
12.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  7. Species-wide inventory ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. A large-effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Phenotyping photosynthesis: yes we can.Journal of experimental botany · 2024
    Article
  11. Genetics as a key to improving crop photosynthesis.Journal of experimental botany · 2022
    Article
  12. Article
  13. Distinct Cold Acclimation of Productivity Traits inInternational journal of molecular sciences · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. AFrontiers in plant science · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Christopher G OakleyDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Linda SavageMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
Samuel LotzMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
G Rudd LarsonMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
Michael F ThomashowMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
David M KramerDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Douglas W SchemskeDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Michigan State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Local adaptation is common, but the traits and genes involved are often unknown. Physiological responses to cold probably contribute to local adaptation in wide-ranging species, but the genetic basis underlying natural variation in these traits has rarely been studied. Using a recombinant inbred (495 lines) mapping population from locally adapted populations of Arabidopsis thaliana from Sweden and Italy, we grew plants at low temperature and mapped quantitative trait loci (QTLs) for traits related to photosynthesis: maximal quantum efficiency (Fv/Fm), rapidly reversible photoprotection (NPQfast), and photoinhibition of PSII (NPQslow) using high-throughput, whole-plant measures of chlorophyll fluorescence. In response to cold, the Swedish line had greater values for all traits, and for every trait, large effect QTLs contributed to parental differences. We found one major QTL affecting all traits, as well as unique major QTLs for each trait. Six trait QTLs overlapped with previously published locally adaptive QTLs based on fitness measured in the native environments over 3 years. Our results demonstrate that photosynthetic responses to cold can vary dramatically within a species, and may predominantly be caused by a few QTLs of large effect. Some photosynthesis traits and QTLs probably contribute to local adaptation in this system.

Indexed as

Cold TemperatureQuantitative Trait LociAdaptation, BiologicalArabidopsisItalyPhotosynthesisSwedenAdaptationchlorophyll fluorescencecold acclimationFv/Fmgenotype by environment interactionnatural variationnon-photochemical quenchingphotoprotectionphotosynthesisQTL mapping

Identifiers

PMID29300935
PMCPMC5853396
OpenAlexW2780443773

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.