Evidence map›Paper›PMID 29300775›Full record

ArticlePloS one2018

Analytical profiling of mutations in quinolone resistance determining region of gyrA gene among UPEC.

Lesley R Varughese, Meenakshi Rajpoot, Soniya Goyal, Ravinder Mehra, Vinod Chhokar, Vikas Beniwal

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  5. 2002-2022 Quinolone Resistance inVeterinary sciences · 2025
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  9. Role of phage therapy in acute gastroenteritis.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2025
    Review
  10. Article
  11. Metabolic Rewiring ofMetabolites · 2024
    Review
  12. Fluoroquinolone-Based Organic Salts (GUMBOS) with Antibacterial Potential.International journal of molecular sciences · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Molecular epidemiology of antibiotic-resistantIranian journal of microbiology · 2023
    Article
  17. Article
  18. Article
  19. Review
  20. Burden of Fluoroquinolone Resistance in Clinical Isolates ofEthiopian journal of health sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lesley R VarugheseDepartment of Biotechnology, Maharishi Markandeshwar University, Mullana, Ambala, India.
Meenakshi RajpootDepartment of Biotechnology, Maharishi Markandeshwar University, Mullana, Ambala, India.
Soniya GoyalDepartment of Biotechnology, Maharishi Markandeshwar University, Mullana, Ambala, India.
Ravinder MehraDepartment of Bio & Nano Technology, Guru Jambheshwar University of Science & Technology, Hisar, Haryana, India.
Vinod ChhokarDepartment of Bio & Nano Technology, Guru Jambheshwar University of Science & Technology, Hisar, Haryana, India.
Vikas BeniwalDepartment of Biotechnology, Maharishi Markandeshwar University, Mullana, Ambala, India.ORCID 0000-0002-9152-3186
Maharishi Markandeshwar University, Mullana · INGuru Jambheshwar University of Science and Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in gyrA are the primary cause of quinolone resistance encountered in gram-negative clinical isolates. The prospect of this work was to analyze the role of gyrA mutations in eliciting high quinolone resistance in uropathogenic E.coli (UPEC) through molecular docking studies. Quinolone susceptibility testing of 18 E.coli strains isolated from UTI patients revealed unusually high resistance level to all the quinolones used; especially norfloxacin and ciprofloxacin. The QRDR of gyrA was amplified and sequenced. Mutations identified in gyrA of E.coli included Ser83Leu, Asp87Asn and Ala93Gly/Glu. Contrasting previous reports, we found Ser83Leu substitution in sensitive strains. Strains with S83L, D87N and A93E (A15 and A26) demonstrated norfloxacin MICs ≥1024mg/L which could be proof that Asp87Asn is necessary for resistance phenotype. Resistance to levofloxacin was comparatively lower in all the isolates. Docking of 4 quinolones (ciprofloxacin, ofloxacin, levofloxacin and norfloxacin) to normal and mutated E.coli gyrase A protein demonstrated lower binding energies for the latter, with significant displacement of norfloxacin in the mutated GyrA complex and least displacement in case of levofloxacin.

Indexed as

Anti-Bacterial AgentsDNA GyraseDrug Resistance, BacterialEscherichia coli InfectionsEscherichia coli ProteinsHumansMicrobial Sensitivity TestsMolecular Docking SimulationMutationQuinolonesSequence Homology, Nucleic AcidUrinary Tract InfectionsUropathogenic Escherichia coliAnti-Bacterial AgentsDNA GyraseEscherichia coli ProteinsQuinolones

Identifiers

PMID29300775
PMCPMC5754135
OpenAlexW2781512160

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.