Evidence map›Paper›PMID 29300383›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2018

Genetic analysis of CHARGE syndrome identifies overlapping molecular biology.

Amanda Moccia, Anshika Srivastava, Jennifer M Skidmore, John A Bernat, Marsha Wheeler, Jessica X Chong, Deborah Nickerson, Michael Bamshad, Margaret A Hefner, Donna M Martin and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 64 citations in OpenAlex.

  1. Vitamin BNature communications · 2026
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  4. International journal of molecular sciences · 2026
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  6. Vitamin BResearch square · 2025
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  8. Genomic analysis of 11,555 probands identifies 60 dominant congenital heart disease genes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. [CHARGE syndrome in a neonate].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2024
    Article
  12. Article
  13. Review
  14. Novel Genetic and Phenotypic Expansion in AmelioratedInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. A case report of CHARGE syndrome caused by a de novoSAGE open medical case reports · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Amanda MocciaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Anshika SrivastavaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Jennifer M SkidmoreDepartment of Pediatrics, University of Michigan Medical School, Ann Arbor, Michigan, USA.
John A BernatDepartment of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Marsha WheelerUniversity of Washington Center for Mendelian Genomics, University of Washington, Seattle, Washington, USA.
Jessica X ChongUniversity of Washington Center for Mendelian Genomics, University of Washington, Seattle, Washington, USA.
Deborah NickersonUniversity of Washington Center for Mendelian Genomics, University of Washington, Seattle, Washington, USA.
Michael BamshadUniversity of Washington Center for Mendelian Genomics, University of Washington, Seattle, Washington, USA.
Margaret A HefnerDepartment of Pediatrics, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Donna M MartinDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, USA. donnamm@umich.edu.
Stephanie L BielasDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, USA. sbielas@umich.edu.
University of Michigan–Ann Arbor · USUniversity of Washington · USSaint Louis University · USUniversity of Iowa · USWashington Center · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
CARDIOVASCULAR RESEARCH TRAINING PROGRAMT32HL007828 · NHLBI · UNIVERSITY OF WASHINGTON · PI Francis Kim, Farid Moussavi-Harami · 1997 to 2026
$10.2M
Developmental Mechanisms of the Chromodomain Gene Chd7R01DC009410 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M. · 2009 to 2018
$3.7M
Exploration of Connexin26 Genotypes, Phenotypes, and Gene ReplacementR01DC014456 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M., RAPHAEL, YEHOASH · 2016 to 2020
$2.5M
Neurogenesis: Career Development Plan in the Genetic and Modeling of MicrocephalyR00HD069624 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BIELAS, STEPHANIE LEE · 2013 to 2015
$691k
NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NHLBI NIH HHS T32 HL007828NICHD NIH HHS R00 HD069624NIDCD NIH HHS R01 DC009410NIDCD NIH HHS R01 DC014456NIGMS NIH HHS T32 GM007544
6 · The paper itself

Abstract

purposeCHARGE syndrome is an autosomal-dominant, multiple congenital anomaly condition characterized by vision and hearing loss, congenital heart disease, and malformations of craniofacial and other structures. Pathogenic variants in CHD7, encoding adenosine triphosphate-dependent chromodomain helicase DNA binding protein 7, are present in the majority of affected individuals. However, no causal variant can be found in 5-30% (depending on the cohort) of individuals with a clinical diagnosis of CHARGE syndrome.

methodsWe performed whole-exome sequencing (WES) on 28 families from which at least one individual presented with features highly suggestive of CHARGE syndrome.

resultsPathogenic variants in CHD7 were present in 15 of 28 individuals (53.6%), whereas 4 (14.3%) individuals had pathogenic variants in other genes (RERE, KMT2D, EP300, or PUF60). A variant of uncertain clinical significance in KDM6A was identified in one (3.5%) individual. The remaining eight (28.6%) individuals were not found to have pathogenic variants by WES.

conclusionThese results demonstrate that the phenotypic features of CHARGE syndrome overlap with multiple other rare single-gene syndromes. Additionally, they implicate a shared molecular pathology that disrupts epigenetic regulation of multiple-organ development.

Indexed as

AdolescentAdultCarrier ProteinsCHARGE SyndromeChildChild, PreschoolCohort StudiesDNA-Binding ProteinsDNA HelicasesE1A-Associated p300 ProteinEpigenesis, GeneticFemaleGenetic TestingHumansInfantMaleCarrier ProteinsCHD7 protein, humanDNA-Binding ProteinsDNA HelicasesE1A-Associated p300 ProteinEP300 protein, humanKMT2D protein, humanNeoplasm Proteinspoly-U binding splicing factor 60KDaRepressor ProteinsRERE protein, humanRNA Splicing FactorsCHARGEchromatinexomegeneticsoligogenicity

Identifiers

PMID29300383
PMCPMC6034995
OpenAlexW2781481218

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.