Evidence map›Paper›PMID 29300083›Full record

ReviewACS chemical biology2018

Identifying Novel Enhancer Elements with CRISPR-Based Screens.

Jason C Klein, Wei Chen, Molly Gasperini, Jay Shendure

Abstract readReview
In one paragraph

Review in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. The role of single-cell genomics in human genetics.Journal of medical genetics · 2022
    Review
  9. Review
  10. Review
  11. Enhancer redundancy in development and disease.Nature reviews. Genetics · 2021
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jason C KleinDepartment of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.ORCID 0000-0001-9566-6347
Wei ChenMolecular Engineering & Science Institute, University of Washington , Seattle, Washington 98195, United States.
Molly GasperiniDepartment of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.
Jay ShendureDepartment of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Massively parallel reporter assays and genome editing of ENCODE predicted regulatory elementsUM1HG009408 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SHENDURE, JAY ASHOK · 2017 to 2021
$7.6M
Functional Validation of Thousands of GWAS VariantsF30HG009479 · NHGRI · UNIVERSITY OF WASHINGTON · PI KLEIN, JASON CHESLER · 2017 to 2020
$164k
Howard Hughes Medical InstituteNHGRI NIH HHS F30 HG009479NHGRI NIH HHS T32 HG000035NHGRI NIH HHS UM1 HG009408NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

Enhancers control the spatiotemporal expression of genes and are essential for encoding differentiation and development. Since their discovery more than three decades ago, researchers have largely studied enhancers removed from their genomic context. The recent adaptation of CRISPR/Cas9 to genome editing in higher organisms now allows researchers to perturb and test these elements in their genomic context, through both mutation and epigenetic modulation. In this Perspective, we discuss recent advances in scanning noncoding regions of the genome for enhancer activity using CRISPR-based tools.

Indexed as

CRISPR-Associated ProteinsCRISPR-Cas SystemsEndonucleasesEnhancer Elements, GeneticGene EditingHumansNeisseriaRNA, Guide, CRISPR-Cas SystemsCRISPR-Associated ProteinsEndonucleasesRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID29300083
PMCPMC6218247

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.