Evidence map›Paper›PMID 29300010›Full record

ArticleNature2018

Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts.

Raymond W Bourdeau, Audrey Lee-Gosselin, Anupama Lakshmanan, Arash Farhadi, Sripriya Ravindra Kumar, Suchita P Nety, Mikhail G Shapiro

Abstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 188 papers.

0numbers the graph read from it
0cells of the map it votes in
188citing papers in PubMed
30.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

188 citing papers in PubMed, 402 citations in OpenAlex.

  1. Review
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  7. Endothelial Continuum and Capillary Specialization in Pulmonary Vascular Development.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Review
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  12. Chemical reviews · 2026
    Review
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128 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Raymond W BourdeauDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Audrey Lee-GosselinDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Anupama LakshmananDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Arash FarhadiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Sripriya Ravindra KumarDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Suchita P NetyDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Mikhail G ShapiroDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
California Institute of Technology · US

Funding

Biogenic Gas Nanostructures As Molecular Imaging Reporters For UltrasoundR01EB018975 · NIBIB · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Mikhail Shapiro · 2014 to 2026
$5.9M
NIBIB NIH HHS R01 EB018975
6 · The paper itself

Abstract

The mammalian microbiome has many important roles in health and disease, and genetic engineering is enabling the development of microbial therapeutics and diagnostics. A key determinant of the activity of both natural and engineered microorganisms in vivo is their location within the host organism. However, existing methods for imaging cellular location and function, primarily based on optical reporter genes, have limited deep tissue performance owing to light scattering or require radioactive tracers. Here we introduce acoustic reporter genes, which are genetic constructs that allow bacterial gene expression to be visualized in vivo using ultrasound, a widely available inexpensive technique with deep tissue penetration and high spatial resolution. These constructs are based on gas vesicles, a unique class of gas-filled protein nanostructures that are expressed primarily in water-dwelling photosynthetic organisms as a means to regulate buoyancy. Heterologous expression of engineered gene clusters encoding gas vesicles allows Escherichia coli and Salmonella typhimurium to be imaged noninvasively at volumetric densities below 0.01% with a resolution of less than 100 μm. We demonstrate the imaging of engineered cells in vivo in proof-of-concept models of gastrointestinal and tumour localization, and develop acoustically distinct reporters that enable multiplexed imaging of cellular populations. This technology equips microbial cells with a means to be visualized deep inside mammalian hosts, facilitating the study of the mammalian microbiome and the development of diagnostic and therapeutic cellular agents.

Indexed as

AcousticsGenes, BacterialAnimalsEscherichia coliFemaleGasesGastrointestinal TractGene Expression Regulation, BacterialGenes, ReporterGenetic EngineeringHeterograftsHigh-Throughput Screening AssaysHumansMiceMice, Inbred BALB CMice, NudeGasesgas vesicle proteinProteins

Identifiers

PMID29300010
PMCPMC5920530
OpenAlexW2782137090

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.