Evidence map›Paper›PMID 29299797›Full record

ArticleEcotoxicology (London, England)2018

Transcriptome assembly and expression profiling of the molecular responses to cadmium toxicity in cerebral ganglia of wolf spider Pardosa pseudoannulata (Araneae: Lycosidae).

Huilin Yang, Yuande Peng, Yixue Shi, Jianxiang Tian, Juan Wang, Xianjin Peng, Chunliang Xie, Xiang Xu, Qisheng Song, Zhi Wang and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Ecotoxicology (London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 20 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Huilin YangCollege of Orient Science & Technology, Hunan Agriculture University, No. 1 Nongda Road, Changsha, 410128, Hunan, China.
Yuande PengInstitute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, Hunan, China.
Yixue ShiCollege of Bioscience and Biotechnology, Hunan Agriculture University, No. 1 Nongda Road, Changsha, 410128, Hunan, China.
Jianxiang TianCollege of Continuing Education, Hunan Agriculture University, No. 1 Nongda Road, Changsha, 410128, Hunan, China.
Juan WangCollege of Bioscience and Biotechnology, Hunan Agriculture University, No. 1 Nongda Road, Changsha, 410128, Hunan, China.
Xianjin PengCollege of Life Science, Hunan Normal University, Changsha, 410006, Hunan, China.
Chunliang XieInstitute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, Hunan, China.
Xiang XuCollege of Life Science, Hunan Normal University, Changsha, 410006, Hunan, China.
Qisheng SongDivision of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.
Zhi WangCollege of Bioscience and Biotechnology, Hunan Agriculture University, No. 1 Nongda Road, Changsha, 410128, Hunan, China. wangzhispider@hotmail.com.
Zhiyue LvDepartment of Parasitology, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, 510080, China. lvzhiyue@mail.sysu.edu.cn.
Hunan Agricultural University · CNChinese Academy of Agricultural Sciences · CNHunan Normal University · CNSun Yat-sen University · CNUniversity of Missouri · US

Funding

Agricultural Science and Technology Innovation Program of China CAAS-ASTIP-2017-IBFCNational Natural Science Foundation of China 31472017Project of Science and Technology Department of Hunan Province 2014FJ2003
6 · The paper itself

Abstract

Cadmium (Cd) is a heavy metal that can cause irreversible toxicity to animals, and is an environmental pollutant in farmlands. Spiders are considered to be an excellent model for investigating the impacts of heavy metals on the environment. To date, the changes at the molecular level in the cerebral ganglia of spiders are poorly understood. Cd exposure leads to strong damage in the nervous system, such as apoptosis and necrosis of nerve cells, therefore we conducted a transcriptomic analysis of Pardosa pseudoannulata cerebral ganglia under Cd stress to profile differential gene expression (DGE). We obtained a total of 123,328 assembled unigenes, and 1441 Cd stress-associated DEGs between the Cd-treated and control groups. Expression profile analysis demonstrated that many genes involved in calcium signaling, cGMP-PKG signaling, tyrosine metabolism, phototransduction-fly, melanogenesis and isoquinoline alkaloid biosynthesis were up-regulated under Cd stress, whereas oxidative phosphorylation-related, nervous disease-associated, non-alcoholic fatty liver disease-associated, and ribosomal-associated genes were down-regulated. Here, we provide a comprehensive set of DEGs influenced by Cd stress, and heavy metal stress, and provide new information for elucidating the neurotoxic mechanisms of Cd stress in spiders.

Indexed as

AnimalsCadmiumEnvironmental PollutantsGene Expression ProfilingSpidersTranscriptomeCadmiumEnvironmental PollutantsCadmiumCerebral ganglionP. pseudoannulataTranscriptomic

Identifiers

PMID29299797
PMCPMC5847060
OpenAlexW2782282035

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.