Evidence map›Paper›PMID 29299153›Full record

ArticleOncotarget2017

Identify clear cell renal cell carcinoma related genes by gene network.

Fangrong Yan, Yue Wang, Chunhui Liu, Huiling Zhao, Liya Zhang, Xiaofan Lu, Chen Chen, Yaoyan Wang, Tao Lu, Fei Wang

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Fangrong Yan *Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Yue Wang *Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Chunhui LiuZhongda Hospital Southeast University, Nanjing, P.R. China.
Huiling ZhaoResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Liya ZhangResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Xiaofan LuResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Chen ChenResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Yaoyan WangResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
Tao LuState Key Laboratory of Natural Medicine, China Pharmaceutical University, Nanjing, P.R. China.
Fei WangResearch Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, P.R. China.
China Pharmaceutical University · CNZhongda Hospital Southeast University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell renal cell carcinoma (ccRCC) is the most prominent type of kidney cancer in adults. The patients within metastatic ccRCC have a poor 5-year survival rate that is less than 10%. It is essential to identify ccRCC -related genes to help with the understanding of molecular mechanism of ccRCC. In this literature, we aim to identify genes related to ccRCC based on a gene network. We collected gene expression level data of ccRCC from the Cancer Genome Atlas (TCGA) for our analysis. We constructed a co-expression gene network as the first step of our study. Then, the network sparse boosting approach was performed to select the genes which are relevant to ccRCC. Results of our study show there are 15 genes selected from the all genes we collected. Among these genes, 7 of them have been demonstrated to play a key role in development and progression or in drug response of ccRCC. This finding offers clues of gene markers for the treatment of ccRCC.

Indexed as

clear cell renal cell carcinomagene expressiongene markergene networkgene selection

Identifiers

PMID29299153
PMCPMC5746388
OpenAlexW2774873936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.