Evidence map›Paper›PMID 29295707›Full record

ArticleBMC genomics2018

Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus.

Bo-Young Lee, Duck-Hyun Kim, Hui-Su Kim, Bo-Mi Kim, Jeonghoon Han, Jae-Seong Lee

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Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Bo-Young LeeDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea.
Duck-Hyun KimDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea.
Hui-Su KimDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea.
Bo-Mi KimDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea.
Jeonghoon HanDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea.
Jae-Seong LeeDepartment of Biological Science, College of Science, Sungkyunkwan University, Suwon, 16419, South Korea. jslee2@skku.edu.ORCID 0000-0003-0944-5172

Funding

Collaborative Genome Program 20140428National Research Foundation of Korea 2017R1D1A1B03036026
6 · The paper itself

Abstract

backgroundThe mangrove killifish Kryptolebias marmoratus is the only vertebrate that reproduces by self-fertilizing and is an important model species in genetics and marine ecotoxicology. Using whole-genome and transcriptome sequences, we identified all members of the cytochrome P450 (CYP) family in this model teleost and compared them with those of other teleosts.

resultsA total of 74 cytochrome P450 genes and one pseudogene were identified in K. marmoratus. Phylogenetic analysis indicated that the CYP genes in clan 2 were most expanded, while synteny analysis with other species showed orthologous relationships of CYP subfamilies among teleosts. In addition to the CYP2K expansions, five tandem duplicated gene copies of CYP5A were observed. These features were unique to K. marmoratus.

conclusionsThese results shed a light on CYP gene evolution, particularly the co-localized CYP2K, CYP5A, and CYP46A subfamilies in fish. Future studies of CYP expression could identify specific endogenous and exogenous environmental factors that triggered the evolution of tandem CYP duplication in K. marmoratus.

Indexed as

Multigene FamilyAnimalsCytochrome P-450 Enzyme SystemCytochrome P450 Family 46Fish ProteinsGenes, DuplicateKillifishesPhylogenySyntenyCytochrome P-450 Enzyme SystemCytochrome P450 Family 46Fish ProteinsDrug metabolismGene family expansionKillifishModel animalRivulusTandem duplication

Identifiers

PMID29295707
PMCPMC5751882

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.