Evidence map›Paper›PMID 29295704›Full record

ArticleBMC genomics2018

Acyl-CoA-binding protein family members in laticifers are possibly involved in lipid and latex metabolism of Hevea brasiliensis (the Para rubber tree).

Zhiyi Nie, Yihang Wang, Chuntai Wu, Yu Li, Guijuan Kang, Huaide Qin, Rizhong Zeng

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zhiyi NieRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Yihang WangRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Chuntai WuRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Yu LiRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Guijuan KangRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Huaide QinRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China.
Rizhong ZengRubber Research Institute & Key Laboratory of Biology and Genetic Resources of Rubber Trees, Ministry of Agriculture of China, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China. hnzrz@aliyun.com.
Chinese Academy of Tropical Agricultural Sciences · CNRubber Research Institute · CNHainan University · CN

Funding

Central Public-interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences 1630022015001Major Scientific & Technological Projects of Hainan Province ZDKJ2016020National Natural Science Foundation of China 31770642
6 · The paper itself

Abstract

backgroundAcyl-CoA-binding proteins (ACBPs) are mainly involved in acyl-CoA ester binding and trafficking in eukaryotic cells, and their various functions have been characterized in model plants, such as Arabidopsis thaliana (A. thaliana), Oryza sativa (rice), and other plant species. In the present study, genome-wide mining and expression analysis of ACBP genes was performed on Hevea brasiliensis (the para rubber tree), the most important latex-producing crop in the world.

resultsSix members of the H. brasiliensis ACBP family genes, designated HbACBP1-HbACBP6, were identified from the H. brasiliensis genome. They can be categorized into four classes with different amino acid sequences and domain structures based on the categorization of their A. thaliana counterparts. Phylogenetic analysis shows that the HbACBPs were clustered with those of other closely related species, such as Manihot esculenta, Ricinus communis, and Jatropha carcas, but were further from those of A. thaliana, a distantly related species. Expression analysis demonstrated that the HbACBP1 and HbACBP2 genes are more prominently expressed in H. brasiliensis latex, and their expression can be significantly enhanced by bark tapping (a mechanical wound) and jasmonic acid stimulation, whereas HbACBP3-HbACBP6 had almost the same expression patterns with relatively high levels in mature leaves and male flowers, but a markedly low abundance in the latex. HbACBP1 and HbACBP2 may have crucial roles in lipid and latex metabolism in laticifers, so their subcellular location was further investigated and the results indicated that HbACBP1 is a cytosol protein, whereas HbACBP2 is an endoplasmic reticulum-associated ACBP.

conclusionsIn this study, the H. brasiliensis ACBP family genes were identified. Phylogenetic analyses of the HbABCPs indicate that there is a high conservation and evolutionary relationship between ACBPs in land plants. The HbACBPs are organ/tissue-specifically expressed and have different expression patterns in response to stimulation by bark tapping or ethrel/jasmonic acid. HbACBP1 and HbACBP2 are two important latex ACBPs that might be involved in the lipid and latex metabolism. The results may provide valuable information for further investigations into the biological functions of HbACBPs during latex metabolism and stress responses in H. brasiliensis.

Indexed as

Carrier ProteinsGene ExpressionHeveaLatexLipid MetabolismMultigene FamilyPhylogenyPlant ProteinsProtein DomainsCarrier ProteinsLatexPlant ProteinsAcyl-CoA-binding protein (ACBP)Hevea brasiliensisLatex productionLaticiferRubber biosynthesis

Identifiers

PMID29295704
PMCPMC5751871
OpenAlexW2781890083

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.