Evidence map›Paper›PMID 29295240›Full record

ArticleStudies in health technology and informatics2017

An OMOP CDM-Based Relational Database of Clinical Research Eligibility Criteria.

Yuqi Si, Chunhua Weng

Abstract read
In one paragraph

Article in Studies in health technology and informatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Named Entity Recognition and Normalization for Alzheimer's Disease Eligibility Criteria.Proceedings. IEEE International Conference on Healthcare Informatics · 2023
    Article
  4. Article
  5. Article
  6. A knowledge base of clinical trial eligibility criteria.Journal of biomedical informatics · 2021
    Article
  7. Article
  8. DQueST: dynamic questionnaire for search of clinical trials.Journal of the American Medical Informatics Association : JAMIA · 2019
    Article
  9. Automatic trial eligibility surveillance based on unstructured clinical data.International journal of medical informatics · 2019
    Article
  10. Article
  11. The Data Gap in the EHR for Clinical Research Eligibility Screening.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2018
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuqi SiDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.
Chunhua WengDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.

Funding

Bridging the Semantic Gap Between Research Eligibility Criteria and Clinical DataR01LM009886 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WENG, CHUNHUA · 2009 to 2020
$5.3M
NLM NIH HHS R01 LM009886
6 · The paper itself

Abstract

Eligibility criteria are important for clinical research protocols or clinical practice guidelines for determining who qualify for studies and to whom clinical evidence is applicable, but the free-text format is not amenable for computational processing. In this paper, we described a practical method for transforming free-text clinical research eligibility criteria of Alzheimer's clinical trials into a structured relational database compliant with standards for medical terminologies and clinical data models. We utilized a hybrid natural language processing system and a concept normalization tool to extract medical terms in clinical research eligibility criteria and represent them using the OMOP Common Data Model (CDM) v5. We created a database schema design to store syntactic relations to facilitate efficient cohort queries. We further discussed the potential of applying this method to trials on other diseases and the promise of using it to accelerate clinical research with electronic health records.

Indexed as

Databases, FactualElectronic Health RecordsNatural Language ProcessingCohort StudiesHumansReference StandardsClinical Research InformaticsElectronic Health RecordRelational Data Management

Identifiers

PMID29295240
PMCPMC5893219

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.