Evidence map›Paper›PMID 29294181›Full record

ArticleMolecular genetics and genomics : MGG2018

The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes.

Nóra Á Bana, Anna Nyiri, János Nagy, Krisztián Frank, Tibor Nagy, Viktor Stéger, Mátyás Schiller, Péter Lakatos, László Sugár, Péter Horn and 2 more

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. CNVs with adaptive potential inLife science alliance · 2022
    Article
  12. Article
  13. Article
  14. Anchoring the CerEla1.0 Genome Assembly to Red Deer (Animals : an open access journal from MDPI · 2021
    Article
  15. Genomics of Adaptations in Ungulates.Animals : an open access journal from MDPI · 2021
    Review
  16. Article
  17. Article
  18. GigaByte (Hong Kong, China) · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nóra Á BanaAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Anna NyiriAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
János NagyDepartment of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Krisztián FrankAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Tibor NagyAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Viktor StégerAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Mátyás SchillerAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Péter Lakatos1st Department of Internal Medicine, Semmelweis University, Korányi Sándor str. 2/a, Budapest, 1083, Hungary.
László SugárDepartment of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Péter HornDepartment of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Endre BartaAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
László OroszAgricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary. orosz.laszlo@abc.naik.hu.

Funding

Magyar Tudományos Akadémia E-127/9/1/2012Ministry of Agriculture (HU) NAIK-MBK/M71411Ministry of Health, Social and Family Affairs (HU) ETT-ESKI 006/2009Nemzeti Kutatási és Technológiai Hivatal 1A/007/2004
6 · The paper itself

Abstract

We present here the de novo genome assembly CerEla1.0 for the red deer, Cervus elaphus, an emblematic member of the natural megafauna of the Northern Hemisphere. Humans spread the species in the South. Today, the red deer is also a farm-bred animal and is becoming a model animal in biomedical and population studies. Stag DNA was sequenced at 74× coverage by Illumina technology. The ALLPATHS-LG assembly of the reads resulted in 34.7 × 10

Indexed as

AnimalsAnimals, DomesticCattleChromosome MappingContig MappingDeerGenome-Wide Association StudyMolecular Sequence AnnotationSequence Analysis, DNABos taurus genomeCattle genomeCervus elaphus genomeDeer genomeDe novo assemblyNext-generation sequencing

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.