Evidence map›Paper›PMID 29293639›Full record

ArticlePloS one2018

Identification of the sex-determining locus in grass puffer (Takifugu niphobles) provides evidence for sex-chromosome turnover in a subset of Takifugu species.

Risa Ieda, Sho Hosoya, Shota Tajima, Kazufumi Atsumi, Takashi Kamiya, Aoi Nozawa, Yuma Aoki, Satoshi Tasumi, Takashi Koyama, Osamu Nakamura and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Direct male development in chromosomally ZZ zebrafish.Frontiers in cell and developmental biology · 2024
    Article
  5. Article
  6. Article
  7. Repeated translocation of a supergene underlying rapid sex chromosome turnover inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Y-specificFrontiers in genetics · 2022
    Article
  13. Article
  14. Expanding the classical paradigm: what we have learnt from vertebrates about sex chromosome evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  15. Article
  16. Lessons from an unusual vertebrate sex-determining gene.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Risa IedaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Sho HosoyaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Shota TajimaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Kazufumi AtsumiFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Takashi KamiyaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Aoi NozawaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Yuma AokiFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Satoshi TasumiFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Takashi KoyamaFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Osamu NakamuraSchool of Marine Biosciences, Kitasato University, Sagamihara, Kanagawa, Japan.
Yuzuru SuzukiFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.
Kiyoshi KikuchiFisheries Laboratory, University of Tokyo, Hamamatsu, Shizuoka, Japan.ORCID 0000-0001-5435-198X
The University of Tokyo · JPKitasato University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is increasing evidence for frequent turnover in sex chromosomes in vertebrates. Yet experimental systems suitable for tracing the detailed process of turnover are rare. In theory, homologous turnover is possible if the new sex-determining locus is established on the existing sex-chromosome. However, there is no empirical evidence for such an event. The genus Takifugu includes fugu (Takifugu rubripes) and its two closely-related species whose sex is most likely determined by a SNP at the Amhr2 locus. In these species, males are heterozygous, with G and C alleles at the SNP site, while females are homozygous for the C allele. To determine if a shift in the sex-determining locus occurred in another member of this genus, we used genetic mapping to characterize the sex-chromosome systems of Takifugu niphobles. We found that the G allele of Amhr2 is absent in T. niphobles. Nevertheless, our initial mapping suggests a linkage between the phenotypic sex and the chromosome 19, which harbors the Amhr2 locus. Subsequent high-resolution analysis using a sex-reversed fish demonstrated that the sex-determining locus maps to the proximal end of chromosome 19, far from the Amhr2 locus. Thus, it is likely that homologous turnover involving these species has occurred. The data also showed that there is a male-specific reduction of recombination around the sex-determining locus. Nevertheless, no evidence for sex-chromosome differentiation was detected: the reduced recombination depended on phenotypic sex rather than genotypic sex; no X- or Y-specific maker was obtained; the YY individual was viable. Furthermore, fine-scale mapping narrowed down the new sex-determining locus to the interval corresponding to approximately 300-kb of sequence in the fugu genome. Thus, T. niphobles is determined to have a young and small sex-determining region that is suitable for studying an early phase of sex-chromosome evolution and the mechanisms underlying turnover of sex chromosome.

Indexed as

Sex ChromosomesSex Determination ProcessesAnimalsCrosses, GeneticFemaleMalePhylogenyPolymorphism, Single NucleotideQuantitative Trait LociRecombination, GeneticTakifugu

Identifiers

PMID29293639
PMCPMC5749833
OpenAlexW2782519807

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.