Evidence map›Paper›PMID 29293521›Full record

ArticlePloS one2018

Genomics of Clostridium taeniosporum, an organism which forms endospores with ribbon-like appendages.

Joshua M Cambridge, Alexandra L Blinkova, Erick I Salvador Rocha, Addys Bode Hernández, Maday Moreno, Edwin Ginés-Candelaria, Benjamin M Goetz, Scott Hunicke-Smith, Ed Satterwhite, Haley O Tucker and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Whole genome sequencing of neurotoxin-producingFrontiers in public health · 2025
    Article
  2. Genomics of the Pathogenic Clostridia.Microbiology spectrum · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Joshua M CambridgeDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.
Alexandra L BlinkovaDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.
Erick I Salvador RochaDepartment of Natural Sciences, Health & Wellness, Miami Dade College-Wolfson Campus, Miami, FL, United States of America.
Addys Bode HernándezDepartment of Natural Sciences, Health & Wellness, Miami Dade College-Wolfson Campus, Miami, FL, United States of America.
Maday MorenoDepartment of Natural Sciences, Health & Wellness, Miami Dade College-Wolfson Campus, Miami, FL, United States of America.
Edwin Ginés-CandelariaDepartment of Natural Sciences, Health & Wellness, Miami Dade College-Wolfson Campus, Miami, FL, United States of America.
Benjamin M GoetzCenter for Computational Biology and Bioinformatics, University of Texas, Austin, TX, United States of America.
Scott Hunicke-SmithGenomic Sequencing and Analysis Facility, Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.
Ed SatterwhiteDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.
Haley O TuckerDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.
James R WalkerDepartment of Molecular Biosciences and Institute for Cell and Molecular Biology, University of Texas, Austin, TX, United States of America.ORCID 0000-0003-0940-5971
The University of Texas at Austin · USMiami Dade College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium taeniosporum, a non-pathogenic anaerobe closely related to the C. botulinum Group II members, was isolated from Crimean lake silt about 60 years ago. Its endospores are surrounded by an encasement layer which forms a trunk at one spore pole to which about 12-14 large, ribbon-like appendages are attached. The genome consists of one 3,264,813 bp, circular chromosome (with 26.6% GC) and three plasmids. The chromosome contains 2,892 potential protein coding sequences: 2,124 have specific functions, 147 have general functions, 228 are conserved but without known function and 393 are hypothetical based on the fact that no statistically significant orthologs were found. The chromosome also contains 101 genes for stable RNAs, including 7 rRNA clusters. Over 84% of the protein coding sequences and 96% of the stable RNA coding regions are oriented in the same direction as replication. The three known appendage genes are located within a single cluster with five other genes, the protein products of which are closely related, in terms of sequence, to the known appendage proteins. The relatedness of the deduced protein products suggests that all or some of the closely related genes might code for minor appendage proteins or assembly factors. The appendage genes might be unique among the known clostridia; no statistically significant orthologs were found within other clostridial genomes for which sequence data are available. The C. taeniosporum chromosome contains two functional prophages, one Siphoviridae and one Myoviridae, and one defective prophage. Three plasmids of 5.9, 69.7 and 163.1 Kbp are present. These data are expected to contribute to future studies of developmental, structural and evolutionary biology and to potential industrial applications of this organism.

Indexed as

Genome, BacterialSpores, BacterialClostridiumPhylogenyProphagesReplication OriginSelenoproteinsSelenoproteins

Identifiers

PMID29293521
PMCPMC5749712
OpenAlexW2781993689

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.