Evidence map›Paper›PMID 29293506›Full record

ArticlePloS one2018

Isolation and characterization of a novel metagenomic enzyme capable of degrading bacterial phytotoxin toxoflavin.

Ji-Eun Choi, Cuong Mai Nguyen, Boyoung Lee, Ji Hyun Park, Joon Young Oh, Jung Sup Choi, Jin-Cheol Kim, Jae Kwang Song

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. UnderstandingPlants (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Frontiers in bioengineering and biotechnology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ji-Eun ChoiResearch Center for Bio-based Chemistry, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Cuong Mai NguyenResearch Center for Eco-Friendly New Materials, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Boyoung LeeResearch Center for Eco-Friendly New Materials, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Ji Hyun ParkResearch Center for Bio-based Chemistry, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Joon Young OhResearch Center for Bio-based Chemistry, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Jung Sup ChoiResearch Center for Eco-Friendly New Materials, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.
Jin-Cheol KimDepartment of Agricultural Chemistry, Institute of Environmentally Friendly Agriculture, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea.
Jae Kwang SongResearch Center for Bio-based Chemistry, Korea Research Institute of Chemical Technology (KRICT), Daejeon, Republic of Korea.ORCID 0000-0001-9328-1275
Korea Research Institute of Chemical Technology · KRChonnam National University · KRIndustrial University of Ho Chi Minh City · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toxoflavin, a 7-azapteridine phytotoxin produced by the bacterial pathogens such as Burkholderia glumae and Burkholderia gladioli, has been known as one of the key virulence factors in crop diseases. Because the toxoflavin had an antibacterial activity, a metagenomic E. coli clone capable of growing well in the presence of toxoflavin (30 μg/ml) was isolated and the first metagenome-derived toxoflavin-degrading enzyme, TxeA of 140 amino acid residues, was identified from the positive E. coli clone. The conserved amino acids for metal-binding and extradiol dioxygenase activity, Glu-12, His-8 and Glu-130, were revealed by the sequence analysis of TxeA. The optimum conditions for toxoflavin degradation were evaluated with the TxeA purified in E. coli. Toxoflavin was totally degraded at an initial toxoflavin concentration of 100 μg/ml and at pH 5.0 in the presence of Mn2+, dithiothreitol and oxygen. The final degradation products of toxoflavin and methyltoxoflavin were fully identified by MS and NMR as triazines. Therefore, we suggested that the new metagenomic enzyme, TxeA, provided the clue to applying the new metagenomic enzyme to resistance development of crop plants to toxoflavin-mediated disease as well as to biocatalysis for Baeyer-Villiger type oxidation.

Indexed as

MetagenomicsAmino Acid SequenceBacterial ToxinsBurkholderiaEnzymesPyrimidinonesSequence Homology, Amino AcidTriazinesBacterial ToxinsEnzymesPyrimidinonestoxoflavinTriazines

Identifiers

PMID29293506
PMCPMC5749703
OpenAlexW2782393269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.