ArticlePloS one2018
High throughput SNP discovery and genotyping in hexaploid wheat.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers, 1 of them a synthesis that pooled it.
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Who cites it
103 citing papers in PubMed, 1 synthesis or guideline pooled it, 212 citations in OpenAlex.
- Meta-QTLs and candidate genes for stripe rust resistance in wheat.Scientific reports · 2021Pooled it
- Development and characterization of near-isogenic lines for quantitative trait locus qDT.3B.1 underlying drought tolerance in wheat.The plant genome · 2026Article
- Next-Generation Genotyping: Innovations Driving Plant Genomic Improvement.Life (Basel, Switzerland) · 2026Review
- Current status and future perspective of genomics-assisted breeding in wheat (Breeding science · 2026Article
- QTL rich genomic clusters in wheat: a catalogue for resistance toFrontiers in plant science · 2026Review
- Dissecting the genetic architecture of pre-harvest sprouting tolerance in Indian dwarf wheat (Triticum sphaerococcum) by multi-locus association analysis.Scientific reports · 2025Article
- A La Carte Seed Harvesting:Ecology and evolution · 2025Article
- Impact of structural variations and genome partitioning on bread wheat hybrid performance.Functional & integrative genomics · 2025Article
- Ancient diversity ofFrontiers in plant science · 2025Article
- Exploring the genetic diversity and population structure of an ancient hexaploid wheat species Triticum sphaerococcum using SNP markers.BMC plant biology · 2024Article
- The genetic architecture of resistance to septoria tritici blotch in French wheat cultivars.BMC plant biology · 2024Article
- High-resolution genetic map and SNP chip for molecular breeding inHorticulture research · 2024Article
- Validation of cross-progeny variance genomic prediction using simulations and experimental data in winter elite bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome.Plant methods · 2024Article
- Wheat dwarfing reshapes plant and fungal development in arbuscular mycorrhizal symbiosis.Mycorrhiza · 2024Article
- A diverse panel of 755 bread wheat accessions harbors untapped genetic diversity in landraces and reveals novel genetic regions conferring powdery mildew resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Different wheat loci are associated to heritable free asparagine content in grain grown under different water and nitrogen availability.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Reviewing the essential roles of remote phenotyping, GWAS and explainable AI in practical marker-assisted selection for drought-tolerant winter wheat breeding.Frontiers in plant science · 2024Review
- Genetic diversity, linkage disequilibrium, and population structure of tetraploid wheat landraces originating from Europe and Asia.BMC genomics · 2023Article
43 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
21 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Because of their abundance and their amenability to high-throughput genotyping techniques, Single Nucleotide Polymorphisms (SNPs) are powerful tools for efficient genetics and genomics studies, including characterization of genetic resources, genome-wide association studies and genomic selection. In wheat, most of the previous SNP discovery initiatives targeted the coding fraction, leaving almost 98% of the wheat genome largely unexploited. Here we report on the use of whole-genome resequencing data from eight wheat lines to mine for SNPs in the genic, the repetitive and non-repetitive intergenic fractions of the wheat genome. Eventually, we identified 3.3 million SNPs, 49% being located on the B-genome, 41% on the A-genome and 10% on the D-genome. We also describe the development of the TaBW280K high-throughput genotyping array containing 280,226 SNPs. Performance of this chip was examined by genotyping a set of 96 wheat accessions representing the worldwide diversity. Sixty-nine percent of the SNPs can be efficiently scored, half of them showing a diploid-like clustering. The TaBW280K was proven to be a very efficient tool for diversity analyses, as well as for breeding as it can discriminate between closely related elite varieties. Finally, the TaBW280K array was used to genotype a population derived from a cross between Chinese Spring and Renan, leading to the construction a dense genetic map comprising 83,721 markers. The results described here will provide the wheat community with powerful tools for both basic and applied research.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.