Evidence map›Paper›PMID 29292397›Full record

ArticleNature ecology & evolution2018

Evolutionary determinants of genome-wide nucleotide composition.

Hongan Long, Way Sung, Sibel Kucukyildirim, Emily Williams, Samuel F Miller, Wanfeng Guo, Caitlyn Patterson, Colin Gregory, Chloe Strauss, Casey Stone and 8 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

  1. The historical domestication of aProceedings of the National Academy of Sciences of the United States of America · 2026
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  2. Translation accuracy in E. coli.Nucleic acids research · 2026
    Article
  3. Article
  4. Extended sequence context shapes mutational bias inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Why recombination hotspots?PLoS genetics · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Evolutionary bioenergetics of sporulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Hongan LongInstitute of Evolution and Marine Biodiversity, KLMME, Ocean University of China, Qingdao, China.
Way SungDepartment of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC, USA.
Sibel KucukyildirimDepartment of Biology, Hacettepe University, Ankara, Turkey.
Emily WilliamsCenter for Mechanisms of Evolution, Arizona State University, PO Box 877701, Tempe, AZ, USA.
Samuel F MillerDepartment of Biology, Indiana University, Bloomington, IN, USA.
Wanfeng GuoCenter for Mechanisms of Evolution, Arizona State University, PO Box 877701, Tempe, AZ, USA.
Caitlyn PattersonDepartment of Biology, Indiana University, Bloomington, IN, USA.
Colin GregoryDepartment of Biology, Indiana University, Bloomington, IN, USA.
Chloe StraussDepartment of Biology, Indiana University, Bloomington, IN, USA.
Casey StoneDepartment of Biology, Indiana University, Bloomington, IN, USA.
Cécile BerneDepartment of Biology, Indiana University, Bloomington, IN, USA.
David KyselaDepartment of Biology, Indiana University, Bloomington, IN, USA.
William R ShoemakerDepartment of Biology, Indiana University, Bloomington, IN, USA.
Mario E MuscarellaDepartment of Plant Biology, University of Illinois, Urbana-Champaign, Champaign, IL, USA.ORCID http://orcid.org/0000-0001-6183-6037
Haiwei LuoSchool of Life Sciences and Partner State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong.
Jay T LennonDepartment of Biology, Indiana University, Bloomington, IN, USA.
Yves V BrunDepartment of Biology, Indiana University, Bloomington, IN, USA.
Michael LynchCenter for Mechanisms of Evolution, Arizona State University, PO Box 877701, Tempe, AZ, USA. mlynch11@asu.edu.ORCID http://orcid.org/0000-0002-1653-0642

Funding

Causes and Population-genetic Consequences of Molecular VariationR35GM122566 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Michael R LYNCH · 2017 to 2026
$7.7M
GLOBAL CONTROL OF DIFFERENTIATION IN CAULOBACTERR01GM051986 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 1995 to 2016
$6.0M
The Rate and Molecular Spectrum of Spontaneous MutationsR01GM036827 · NIGMS · UNIVERSITY OF OREGON · PI LYNCH, MICHAEL R · 1988 to 2016
$5.7M
Population Genomics of Daphnia pulexR01GM101672 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI LYNCH, MICHAEL R · 2013 to 2016
$2.3M
Bacterial Subcellular Organization and its Impact on Growth, Development, Aging, and Surface AdhesionR35GM122556 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 2017 to 2019
$1.6M
Aging in appendaged bacteriaF32GM083581 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KYSELA, DAVID · 2009 to 2011
$144k
NIGMS NIH HHS F32 GM083581NIGMS NIH HHS R01 GM036827NIGMS NIH HHS R01 GM051986NIGMS NIH HHS R01 GM101672NIGMS NIH HHS R35 GM122556NIGMS NIH HHS R35 GM122566
6 · The paper itself

Abstract

One of the long-standing mysteries of evolutionary genomics is the source of the wide phylogenetic diversity in genome nucleotide composition (G + C versus A + T), which must be a consequence of interspecific differences in mutation bias, the efficiency of selection for different nucleotides or a combination of the two. We demonstrate that although genomic G + C composition is strongly driven by mutation bias, it is also substantially modified by direct selection and/or as a by-product of biased gene conversion. Moreover, G + C composition at fourfold redundant sites is consistently elevated above the neutral expectation-more so than for any other class of sites.

Indexed as

Evolution, MolecularGene ConversionGenomeMutationNucleotidesPhylogenyNucleotides

Identifiers

PMID29292397
PMCPMC6855595

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.