Evidence map›Paper›PMID 29292212›Full record

ArticleMolecular and biochemical parasitology2018

Enrichment of Cryptosporidium parvum from in vitro culture as measured by total RNA and subsequent sequence analysis.

Jessica C Kissinger, Karen E Hermetz, Keith M Woods, Steve J Upton

Abstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Current tropical medicine reports · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jessica C KissingerCenter for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA; Department of Genetics, University of Georgia, Athens, GA, 30602, USA; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA. Electronic address: jkissing@uga.edu.
Karen E HermetzCenter for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA.
Keith M WoodsDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Steve J UptonDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.

Funding

MULTIVALENT AAV VECTORS FOR HIV-1 GENE THERAPYR01AI040001 · NIAID · CITY OF HOPE NATIONAL MEDICAL CENTER · PI CHATTERJEE, SASWATI · 1996 to 1998
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NIAID NIH HHS N01 AI040001
6 · The paper itself

Abstract

Cryptosporidium parvum is an apicomplexan parasite that infects a wide range of hosts including humans. Due to the parasite's quasi-intracellular, intermembrane location on the host cell, it is difficult to purify parasites from in vitro and in vivo infections for molecular studies. We have developed a method to greatly enrich in vitro C. parvum merozoites from host cells. The efficiency of the protocol was assessed with C. parvum (KSU-1 isolate) parasites of different developmental stages isolated following a synchronized infection of HCT-8 host cells. Total RNA was extracted from the samples and used to evaluate the quantity of host cell contamination in enriched parasite fractions. The quality of the RNA was verified using an Agilent BioAnalyzer. cDNA libraries of RNA isolated from 24 and 48 h C. parvum in vitro preparations isolated via this protocol were sequenced at the Broad Institute via an NIH Microbial Sequencing (GSCID) Contract. Cryptosporidium sequences comprised 30% of the cDNA reads, demonstrating significant enrichment.

Indexed as

Sequence AnalysisCell Culture TechniquesCell LineCryptosporidium parvumHumansRNA, ProtozoanRNA, ProtozoanCryptosporidiumEnrichmentIn vitroMerozoiteTissue culture

Identifiers

PMID29292212
PMCPMC5828902

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.