Evidence map›Paper›PMID 29290486›Full record

ArticleStructure (London, England : 1993)2018

Mechanisms of Lipid Scrambling by the G Protein-Coupled Receptor Opsin.

Giulia Morra, Asghar M Razavi, Kalpana Pandey, Harel Weinstein, Anant K Menon, George Khelashvili

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Opsins are Phospholipid Scramblases in All Domains of Life.bioRxiv : the preprint server for biology · 2025
    Article
  7. Lipid Scrambling Pathways in the Sec61 Translocon Complex.Journal of the American Chemical Society · 2025
    Article
  8. Article
  9. Article
  10. Insertases scramble lipids: Molecular simulations of MTCH2.Structure (London, England : 1993) · 2024
    Article
  11. Article
  12. Insertases Scramble Lipids: Molecular Simulations of MTCH2.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Rethinking Opsins.Molecular biology and evolution · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Giulia MorraDepartment of Physiology and Biophysics, Weill Cornell Medical College, 1300 York Avenue, Room LC-501A, New York, NY 10065, USA; Istituto di Chimica del Riconoscimento Molecolare, CNR, Via Mario Bianco 9, 20131 Milan, Italy.
Asghar M RazaviDepartment of Physiology and Biophysics, Weill Cornell Medical College, 1300 York Avenue, Room LC-501A, New York, NY 10065, USA.
Kalpana PandeyDepartment of Biochemistry, Weill Cornell Medical College, New York, NY 10065, USA.
Harel WeinsteinDepartment of Physiology and Biophysics, Weill Cornell Medical College, 1300 York Avenue, Room LC-501A, New York, NY 10065, USA; Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY 10065, USA.
Anant K MenonDepartment of Biochemistry, Weill Cornell Medical College, New York, NY 10065, USA.
George KhelashviliDepartment of Physiology and Biophysics, Weill Cornell Medical College, 1300 York Avenue, Room LC-501A, New York, NY 10065, USA; Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY 10065, USA. Electronic address: gek2009@med.cornell.edu.
Cornell University · USInstitute of Chemistry of Molecular Recognition · IT

Funding

Molecular mechanism of phospholipid scrambling by rhodopsinR21EY028314 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI KHELASHVILI, GEORGE, MENON, ANANT K · 2017 to 2018
$466k
Rhodopsin-mediated phospholipid flippingR21EY024207 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MENON, ANANT K · 2014 to 2015
$462k
NEI NIH HHS R21 EY024207NEI NIH HHS R21 EY028314
6 · The paper itself

Abstract

Several class-A G protein-coupled receptor (GPCR) proteins act as constitutive phospholipid scramblases catalyzing the transbilayer translocation of >10,000 phospholipids per second when reconstituted into synthetic vesicles. To address the molecular mechanism by which these proteins facilitate rapid lipid scrambling, we carried out large-scale ensemble atomistic molecular dynamics simulations of the opsin GPCR. We report that, in the process of scrambling, lipid head groups traverse a dynamically revealed hydrophilic pathway in the region between transmembrane helices 6 and 7 of the protein while their hydrophobic tails remain in the bilayer environment. We present quantitative kinetic models of the translocation process based on Markov State Model analysis. As key residues on the lipid translocation pathway are conserved within the class-A GPCR family, our results illuminate unique aspects of GPCR structure and dynamics while providing a rigorous basis for the design of variants of these proteins with defined scramblase activity.

Indexed as

Biological TransportComputer SimulationHumansLipid BilayersMolecular Dynamics SimulationOpsinsPhospholipid Transfer ProteinsLipid BilayersOpsinsPhospholipid Transfer Proteinsadaptive samplingGPCRlipid flip-flopMarkov state modelsmolecular dynamics simulationsphospholipidrhodopsinscramblase

Identifiers

PMID29290486
PMCPMC5803311
OpenAlexW2777640671

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.