Evidence map›Paper›PMID 29288526›Full record

ArticleInfluenza and other respiratory viruses2018

The transmission dynamics and diversity of human metapneumovirus in Peru.

Simon Pollett, Nidia S Trovão, Yi Tan, John-Sebastian Eden, Rebecca A Halpin, Jayati Bera, Suman R Das, David Wentworth, Victor Ocaña, Silvia M Mendocilla and 7 more

Abstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Simon PollettUniversity of Sydney, Sydney, NSW, Australia.ORCID 0000-0002-4450-7028
Nidia S TrovãoNational Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-2106-1166
Yi TanJ Craig Venter Institute, Rockville, MD, USA.
John-Sebastian EdenUniversity of Sydney, Sydney, NSW, Australia.
Rebecca A HalpinJ Craig Venter Institute, Rockville, MD, USA.
Jayati BeraJ Craig Venter Institute, Rockville, MD, USA.
Suman R DasJ Craig Venter Institute, Rockville, MD, USA.
David WentworthJ Craig Venter Institute, Rockville, MD, USA.
Victor OcañaPachitea Health Center, Ministerio de Salud, Piura, Peru.
Silvia M MendocillaHospital Daniel Alcides Carrión, Ministerio de Salud, Callao, Peru.
Carlos ÁlvarezDirección Regional de Salud Loreto, Loreto, Peru.
Maria E CalistoHospital Nacional Edgardo Rebagliati Martins, Seguro Social de Salud-EsSalud, Lima, Peru.
Josefina GarciaUS Naval Medical Research Unit No-6, Lima, Peru.
Eric HalseyUS Naval Medical Research Unit No-6, Lima, Peru.
Julia S AmpueroUS Naval Medical Research Unit No-6, Lima, Peru.
Martha I NelsonNational Institutes of Health, Bethesda, MD, USA.
Mariana LeguiaUS Naval Medical Research Unit No-6, Lima, Peru.

Funding

The J. Craig Venter Institute Genome Center for Infectious DiseasesU19AI110819 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI NELSON, KAREN E., NIERMAN, WILLIAM CHARLES · 2014 to 2018
$29.7M
NIAID NIH HHS HHSN272200900007CNIAID NIH HHS U19 AI110819
6 · The paper itself

Abstract

backgroundThe transmission dynamics of human metapneumovirus (HMPV) in tropical countries remain unclear. Further understanding of the genetic diversity of the virus could aid in HMPV vaccine design and improve our understanding of respiratory virus transmission dynamics in low- and middle-income countries. MATERIALS &

methodsWe examined the evolution of HMPV in Peru through phylogenetic analysis of 61 full genome HMPV sequences collected in three ecologically diverse regions of Peru (Lima, Piura, and Iquitos) during 2008-2012, comprising the largest data set of HMPV whole genomes sequenced from any tropical country to date.

resultsWe revealed extensive genetic diversity generated by frequent viral introductions, with little evidence of local persistence. While considerable viral traffic between non-Peruvian countries and Peru was observed, HMPV epidemics in Peruvian locales were more frequently epidemiologically linked with other sites within Peru. We showed that Iquitos experienced greater HMPV traffic than the similar sized city of Piura by both Bayesian and maximum likelihood methods.

conclusionsThere is extensive HMPV genetic diversity even within smaller and relatively less connected cities of Peru and this virus is spatially fluid. Greater diversity of HMPV in Iquitos compared to Piura may relate to higher volumes of human movement, including air traffic to this location.

Indexed as

Genetic VariationAdolescentAdultAgedChildChild, PreschoolFemaleGenome, ViralHumansInfantMaleMetapneumovirusMiddle AgedParamyxoviridae InfectionsPeruYoung Adulthuman metapneumovirusPeruphylogeographytransmission dynamics

Identifiers

PMID29288526
PMCPMC6005599

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.