Evidence map›Paper›PMID 29288197›Full record

ArticleThe Journal of biological chemistry2018

Recruitment and allosteric stimulation of a histone-deubiquitinating enzyme during heterochromatin assembly.

Alexis Zukowski, Nouf Omar Al-Afaleq, Emily D Duncan, Tingting Yao, Aaron M Johnson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Alexis ZukowskiFrom the Department of Biochemistry and Molecular Genetics and.
Nouf Omar Al-Afaleqthe Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523.
Emily D DuncanFrom the Department of Biochemistry and Molecular Genetics and.
Tingting Yaothe Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523.
Aaron M JohnsonFrom the Department of Biochemistry and Molecular Genetics and aaron.m.johnson@ucdenver.edu.
Colorado State University · USUniversity of Colorado Denver · USUniversity of Colorado Anschutz Medical Campus · US

Funding

Predoctoral Training Program in Molecular BiologyT32GM008730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, SCLAFANI, ROBERT A · 1999 to 2019
$3.3M
Regulation of a Deubiquitinating Enzyme in Proteolysis and Chromatin RemodelingR01GM098401 · NIGMS · COLORADO STATE UNIVERSITY · PI YAO, TINGTING · 2011 to 2021
$2.9M
Mechanisms of heterochromatin targeting and epigenetic genome regulationR35GM119575 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI JOHNSON, AARON M. · 2016 to 2020
$1.9M
NIGMS NIH HHS R01 GM098401NIGMS NIH HHS R35 GM119575NIGMS NIH HHS T32 GM008730
6 · The paper itself

Abstract

Heterochromatin formation in budding yeast is regulated by the silent information regulator (SIR) complex. The SIR complex comprises the NAD-dependent deacetylase Sir2, the scaffolding protein Sir4, and the nucleosome-binding protein Sir3. Transcriptionally active regions present a challenge to SIR complex-mediated

Indexed as

Allosteric RegulationGene Expression Regulation, FungalHeterochromatinHistonesNuclear ProteinsNucleosomesProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuin 2TelomereUbiquitin ThiolesteraseHeterochromatinHistonesNuclear ProteinsNucleosomesSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSIR4 protein, S cerevisiaeSirtuin 2Ubiquitin ThiolesteraseUBP10 protein, S cerevisiaechromatindeubiquitylation (deubiquitination)epigeneticsheterochromatinhistoneSIR complexsirtuinubiquitinationyeast

Identifiers

PMID29288197
PMCPMC5818202
OpenAlexW2776490122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.