Evidence map›Paper›PMID 29286491›Full record

ArticleJournal of visualized experiments : JoVE2017

Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos.

Rosemary M Onjiko, Erika P Portero, Sally A Moody, Peter Nemes

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rosemary M OnjikoDepartment of Chemistry, George Washington University.
Erika P PorteroDepartment of Chemistry, George Washington University.
Sally A MoodyDepartment of Anatomy & Regenerative Biology, George Washington University.
Peter NemesDepartment of Chemistry, George Washington University; Department of Chemistry & Biochemistry, University of Maryland, College Park; nemes@umd.edu.

Funding

In Situ Optoguided Microsampling Single-cell Mass Spectrometry for Elucidating Cell HeterogeneityR21GM114854 · NIGMS · GEORGE WASHINGTON UNIVERSITY · PI NEMES, PETER · 2014 to 2015
$361k
Critical Transition-based Correlation Analysis for MetabolomicsR03CA211635 · NCI · UNIV OF MARYLAND, COLLEGE PARK · PI NEMES, PETER, ZENG, CHEN · 2016 to 2016
$153k
NCI NIH HHS R03 CA211635NIGMS NIH HHS R21 GM114854
6 · The paper itself

Abstract

The quantification of small molecules in single cells raises new potentials for better understanding the basic processes that underlie embryonic development. To enable single-cell investigations directly in live embryos, new analytical approaches are needed, particularly those that are sensitive, selective, quantitative, robust, and scalable to different cell sizes. Here, we present a protocol that enables the in situ analysis of metabolism in single cells in freely developing embryos of the South African clawed frog (Xenopus laevis), a powerful model in cell and developmental biology. This approach uses a capillary microprobe to aspirate a defined portion from single identified cells in the embryo, leaving neighboring cells intact for subsequent analysis. The collected cell content is analyzed by a microscale capillary electrophoresis electrospray ionization (CE-ESI) interface coupled to a high-resolution tandem mass spectrometer. This approach is scalable to various cell sizes and compatible with the complex three-dimensional structure of the developing embryo. As an example, we demonstrate that microprobe single-cell CE-ESI-MS enables the elucidation of metabolic cell heterogeneity that unfolds as a progenitor cell gives rise to descendants during development of the embryo. Besides cell and developmental biology, the single-cell analysis protocols described here are amenable to other cell sizes, cell types, or animal models.

Indexed as

AnimalsElectrophoresis, CapillaryMetabolomicsSingle-Cell AnalysisSpectrometry, Mass, Electrospray IonizationTandem Mass SpectrometryXenopus laevis

Identifiers

PMID29286491
PMCPMC5755674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.