Evidence map›Paper›PMID 29285929›Full record

ArticleAnalytical chemistry2018

Application of Electrochemical Devices to Characterize the Dynamic Actions of Helicases on DNA.

Dimithree Kahanda, Kevin T DuPrez, Eduardo Hilario, Marc A McWilliams, Chris H Wohlgamuth, Li Fan, Jason D Slinker

Abstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Structural Basis for S100B Interaction with its Target Proteins.Journal of molecular and genetic medicine : an international journal of biomedical research · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Dimithree KahandaDepartment of Physics, The University of Texas at Dallas , 800 West Campbell Road, PHY 36, Richardson, Texas 75080, United States.
Kevin T DuPrezDepartment of Biochemistry, University of California , 900 University Avenue, Riverside, California 92521, United States.
Eduardo HilarioDepartment of Biochemistry, University of California , 900 University Avenue, Riverside, California 92521, United States.
Marc A McWilliamsDepartment of Physics, The University of Texas at Dallas , 800 West Campbell Road, PHY 36, Richardson, Texas 75080, United States.
Chris H WohlgamuthDepartment of Physics, The University of Texas at Dallas , 800 West Campbell Road, PHY 36, Richardson, Texas 75080, United States.
Li FanDepartment of Biochemistry, University of California , 900 University Avenue, Riverside, California 92521, United States.
Jason D SlinkerDepartment of Physics, The University of Texas at Dallas , 800 West Campbell Road, PHY 36, Richardson, Texas 75080, United States.ORCID 0000-0001-7338-586X
The University of Texas at Dallas · USUniversity of California, Riverside · US

Funding

Investigating the role of XPB helicase in DNA nucleotide excision repairR01GM108893 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI FAN, LI · 2015 to 2019
$1.3M
NIGMS NIH HHS R01 GM108893
6 · The paper itself

Abstract

Much remains to be understood about the kinetics and thermodynamics of DNA helicase binding and activity. Here, we utilize probe-modified DNA monolayers on multiplexed gold electrodes as a sensitive recognition element and morphologically responsive transducer of helicase-DNA interactions. The electrochemical signals from these devices are highly sensitive to structural distortion of the DNA produced by the helicases. We used this DNA electrochemistry to distinguish the details of the DNA interactions of three distinct XPB helicases, which belong to the superfamily-2 of helicases. Clear changes in DNA melting temperature and duplex stability were observed upon helicase binding, shifts that could not be observed with conventional UV-visible absorption measurements. Binding dissociation constants were estimated in the range from 10 to 50 nM and correlated with observations of activity. ATP-stimulated DNA unwinding activity was also followed, revealing exponential time scales and distinct time constants associated with conventional and molecular wrench modes of operation further confirmed by crystal structures. These devices thus provide a sensitive measure of the structural thermodynamics and kinetics of helicase-DNA interactions.

Indexed as

Archaeoglobus fulgidusDNADNA HelicasesElectrochemical TechniquesKineticsNucleic Acid DenaturationSulfolobusThermodynamicsTransition TemperatureDNADNA Helicases

Identifiers

PMID29285929
PMCPMC5957534
OpenAlexW2777115384

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.