Evidence map›Paper›PMID 29285690›Full record

ReviewClinical and translational medicine2017

Using single-cell multiple omics approaches to resolve tumor heterogeneity.

Michael A Ortega, Olivier Poirion, Xun Zhu, Sijia Huang, Thomas K Wolfgruber, Robert Sebra, Lana X Garmire

Abstract readReview
In one paragraph

Review in Clinical and translational medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
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  3. Review
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  7. Article
  8. Resolving tumor evolution: a phylogenetic approach.Journal of the National Cancer Center · 2024
    Review
  9. Review
  10. Article
  11. Review
  12. Article
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  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael A OrtegaCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.
Olivier PoirionCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.
Xun ZhuCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.
Sijia HuangCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.
Thomas K WolfgruberCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA.
Robert SebraIcahn Institute and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Lana X GarmireCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA. lgarmire@cc.hawaii.edu.

Funding

Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI WARD, WILLIAM S · 2012 to 2018
$12.9M
An Integrative Omics Approach to Identify Biomarkers Related to Preeclampsia and Breast Cancer RisksR01HD084633 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2020
$3.0M
Cancer precision medicine through spatially informative single cell image and transcriptomics data analysisR01LM012373 · NLM · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2016 to 2024
$2.4M
An Integrative Bioinformatics Approach to Study Single Cancer Cell HeterogeneityK01ES025434 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARMIRE, LANA X · 2014 to 2018
$905k
National Institute of Child Health and Human Development HD084633National Institute of Environmental Health Sciences K01ES025434National Institute of General Medical Sciences GM103457NICHD NIH HHS R01 HD084633NIEHS NIH HHS K01 ES025434NIGMS NIH HHS P20 GM103457NLM NIH HHS R01 LM012373U.S. National Library of Medicine LM012373
6 · The paper itself

Abstract

It has become increasingly clear that both normal and cancer tissues are composed of heterogeneous populations. Genetic variation can be attributed to the downstream effects of inherited mutations, environmental factors, or inaccurately resolved errors in transcription and replication. When lesions occur in regions that confer a proliferative advantage, it can support clonal expansion, subclonal variation, and neoplastic progression. In this manner, the complex heterogeneous microenvironment of a tumour promotes the likelihood of angiogenesis and metastasis. Recent advances in next-generation sequencing and computational biology have utilized single-cell applications to build deep profiles of individual cells that are otherwise masked in bulk profiling. In addition, the development of new techniques for combining single-cell multi-omic strategies is providing a more precise understanding of factors contributing to cellular identity, function, and growth. Continuing advancements in single-cell technology and computational deconvolution of data will be critical for reconstructing patient specific intra-tumour features and developing more personalized cancer treatments.

Indexed as

CancerGene expressionHeterogeneityMethylationMulti-omicsMutationSingle-cell sequencing

Identifiers

PMID29285690
PMCPMC5746494

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.