Evidence map›Paper›PMID 29284756›Full record

ArticleRNA (New York, N.Y.)2018

Altered stoichiometry of an evolved RNA aptamer.

Shoji Ohuchi, Beatrix Suess

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Shoji OhuchiDepartment of Biology, Technische Universität Darmstadt, 64287 Darmstadt, Germany.ORCID 0000-0001-8042-8231
Beatrix SuessDepartment of Biology, Technische Universität Darmstadt, 64287 Darmstadt, Germany.ORCID 0000-0001-8666-6716

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inhibitory aptamers against a protein are promising as antagonistic reagents and repressive genetic components. Typically, improvement of such aptamers is achieved by acquiring higher binding affinity. Here, we report an alternative mechanism for the improvement of aptamer activity. Recently, we reported a transcriptional activator based on an inhibitory RNA aptamer against lambda cI repressor. We improved the aptamer through in vitro selection (SELEX) from a randomly mutagenized aptamer pool, followed by in vivo screening and truncation. Biochemical analyses indicated that the activity improvement was achieved by alteration of the complex formation stoichiometry, rather than by higher affinity or expression. Our results suggest an alternative strategy for improving aptamer activity.

Indexed as

Aptamers, NucleotideBase SequenceEscherichia coliRepressor ProteinsRNASELEX Aptamer TechniqueTranscriptional ActivationViral Regulatory and Accessory ProteinsAptamers, Nucleotidephage repressor proteinsRepressor ProteinsRNAViral Regulatory and Accessory Proteinsaptamerdirected evolutionrepressorstoichiometry

Identifiers

PMID29284756
PMCPMC5855949

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.