Evidence map›Paper›PMID 29284210›Full record

ArticleJournal of veterinary science2018

Genomic characterization and pathogenic study of two porcine reproductive and respiratory syndrome viruses with different virulence in Fujian, China.

Xiukun Sui, Ting Xin, Xiaoyu Guo, Hong Jia, Ming Li, Xintao Gao, Jing Wu, Yitong Jiang, L Willems, Hongfei Zhu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Xiukun SuiInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Ting XinInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Xiaoyu GuoInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Hong JiaInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Ming LiInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Xintao GaoInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Jing WuInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Yitong JiangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
L WillemsMolecular and Cellular Biology, Gembloux Agro-Bio Tech University of Liège, 5030 Gembloux, Belgium.
Hongfei ZhuInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Shaohua HouInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Chinese Academy of Agricultural Sciences · CNInstitute of Animal Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two strains of porcine reproductive and respiratory syndrome virus (PRRSV) were isolated in 2006 and 2016 and designated as FZ06A and FZ16A, respectively. Inoculation experiments showed that FZ06A caused 100% morbidity and 60% mortality, while FZ16A caused 100% morbidity without death. By using genomic sequence and phylogenetic analyses, close relationships between a Chinese highly pathogenic PRRSV strain and the FZ06A and FZ16A strains were observed. Based on the achieved results, multiple genomic variations in Nsp2, a unique N-glycosylation site (N³³→K³³), and a K151 amino acid (AA) substitution for virulence in the GP5 of FZ16A were detected; except the 30 AA deletion in the Nsp2-coding region. Inoculation experiments were conducted and weaker virulence of FZ16A than FZ06A was observed. Based on our results, a 30 AA deletion in the Nsp2-coding region is an unreliable genomic indicator of a high virulence PRRSV strain. The Nsp2 and GP5 differences, in addition to the virulence difference between these two highly pathogenic PRRSV strains, have the potential to be used to establish a basis for further study of PRRSV virulence determinants and to provide data useful in the development of vaccines against this economically devastating disease.

Indexed as

Genome, ViralImmunity, HumoralAnimalsChinaPhylogenyPorcine respiratory and reproductive syndrome virusSequence AlignmentSwineVirulencegenomicsphylogenyporcine respiratory and reproductive syndrome virusvirulence

Identifiers

PMID29284210
PMCPMC5974515
OpenAlexW2807647345

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.