Evidence map›Paper›PMID 29284042›Full record

ArticlePLoS pathogens2017

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

Pinky Langat, Jayna Raghwani, Gytis Dudas, Thomas A Bowden, Stephanie Edwards, Astrid Gall, Trevor Bedford, Andrew Rambaut, Rodney S Daniels, Colin A Russell and 4 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

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  12. medRxiv : the preprint server for health sciences · 2025
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Pinky LangatWellcome Trust Sanger Institute, Hinxton, United Kingdom.
Jayna RaghwaniDepartment of Zoology, University of Oxford, Oxford, United Kingdom.ORCID 0000-0001-8538-4995
Gytis DudasInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-0227-4158
Thomas A BowdenDivision of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Stephanie EdwardsWellcome Trust Sanger Institute, Hinxton, United Kingdom.
Astrid GallWellcome Trust Sanger Institute, Hinxton, United Kingdom.
Trevor BedfordVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-4039-5794
Andrew RambautInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.
Rodney S DanielsWorldwide Influenza Centre, The Francis Crick Institute, London, United Kingdom.
Colin A RussellDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Oliver G PybusDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
John McCauleyWorldwide Influenza Centre, The Francis Crick Institute, London, United Kingdom.
Paul KellamWellcome Trust Sanger Institute, Hinxton, United Kingdom.ORCID 0000-0003-3166-4734
Simon J WatsonWellcome Trust Sanger Institute, Hinxton, United Kingdom.ORCID 0000-0002-1741-5742

Funding

ONCOLOGY: MOLECULAR BASIS OF CANCERT32CA009528 · NCI · PRINCETON UNIVERSITY · PI BROACH, JAMES R. · 1985 to 2010
$5.9M
Real-time tracking of virus evolution for vaccine strain selection and epidemiological investigationR35GM119774 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BEDFORD, TREVOR BC · 2016 to 2025
$4.1M
Medical Research Council MC_U117512723Medical Research Council MR/L009528/1NIGMS NIH HHS R35 GM119774Wellcome Trust 098051Wellcome Trust 206298/Z/17/ZWellcome Trust FC001030
6 · The paper itself

Abstract

The global-scale epidemiology and genome-wide evolutionary dynamics of influenza B remain poorly understood compared with influenza A viruses. We compiled a spatio-temporally comprehensive dataset of influenza B viruses, comprising over 2,500 genomes sampled worldwide between 1987 and 2015, including 382 newly-sequenced genomes that fill substantial gaps in previous molecular surveillance studies. Our contributed data increase the number of available influenza B virus genomes in Europe, Africa and Central Asia, improving the global context to study influenza B viruses. We reveal Yamagata-lineage diversity results from co-circulation of two antigenically-distinct groups that also segregate genetically across the entire genome, without evidence of intra-lineage reassortment. In contrast, Victoria-lineage diversity stems from geographic segregation of different genetic clades, with variability in the degree of geographic spread among clades. Differences between the lineages are reflected in their antigenic dynamics, as Yamagata-lineage viruses show alternating dominance between antigenic groups, while Victoria-lineage viruses show antigenic drift of a single lineage. Structural mapping of amino acid substitutions on trunk branches of influenza B gene phylogenies further supports these antigenic differences and highlights two potential mechanisms of adaptation for polymerase activity. Our study provides new insights into the epidemiological and molecular processes shaping influenza B virus evolution globally.

Indexed as

Amino Acid SubstitutionAntigenic VariationAntigens, ViralDatabases, GeneticEvolution, MolecularGenetic VariationGenome, ViralGlobal HealthHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza B virusInfluenza, HumanModels, MolecularMolecular EpidemiologyPhylogenyReassortant VirusesAntigens, ViralHemagglutinin Glycoproteins, Influenza VirusRNA-Dependent RNA PolymeraseViral Proteins

Identifiers

PMID29284042
PMCPMC5790164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.