Evidence map›Paper›PMID 29283424›Full record

ArticleInternational journal of molecular sciences2017

Integrated MicroRNA-mRNA Analysis Reveals miR-204 Inhibits Cell Proliferation in Gastric Cancer by Targeting CKS1B, CXCL1 and GPRC5A.

Sirjana Shrestha, Chi-Dung Yang, Hsiao-Chin Hong, Chih-Hung Chou, Chun-San Tai, Men-Yee Chiew, Wen-Liang Chen, Shun-Long Weng, Chung-Chu Chen, Yi-An Chang and 5 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  7. Receptor Tyrosine Kinase: Still an Interesting Target to Inhibit the Proliferation of Vascular Smooth Muscle Cells.American journal of cardiovascular drugs : drugs, devices, and other interventions · 2023
    Review
  8. Review
  9. International journal of molecular sciences · 2022
    Review
  10. Article
  11. Article
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  13. Review
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  17. microRNA-367-3p regulation of GPRC5A is suppressed in ischemic stroke.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2020
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sirjana ShresthaInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. sirju10@yahoo.co.in.
Chi-Dung YangInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. chidung1212@gmail.com.
Hsiao-Chin HongInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. ezrachelkimo@gmail.com.
Chih-Hung ChouInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. chchou23@gmail.com.
Chun-San TaiDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan. chungsan0017019@gmail.com.
Men-Yee ChiewDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan. chiewmene@gmail.com.
Wen-Liang ChenDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan. wenurea@yahoo.com.tw.
Shun-Long WengDepartment of Medicine, Mackay Medical College, New Taipei City 252, Taiwan. a4467@ms7.mmh.org.tw.
Chung-Chu ChenDivision of Hepatology and Gastroenterology, Department of Internal Medicine, Hsinchu Mackay Memorial Hospital, Hsinchu 300, Taiwan. a4059@icloud.com.
Yi-An ChangDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan. b8703126@gmail.com.
Meng-Lin LeeDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan. martin25_lee@hotmail.com.
Wei-Yun HuangInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. richard0609@gmail.com.
Sheng-Da HsuInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. ken.bi95g@nctu.edu.tw.
Yi-Chang ChenInstitute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsinchu 300, Taiwan. cellbox@gmail.com.
Hsien-Da HuangInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, Taiwan. bryan@mail.nctu.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastric cancer (GC) is the second most frequent cause of cancer-related deaths worldwide. MicroRNAs are single-stranded RNA molecules of 21-23 nucleotides that regulate target gene expression through specific base-pairing interactions between miRNA and untranslated regions of targeted mRNAs. In this study, we generated a multistep approach for the integrated analysis of miRNA and mRNA expression. First, both miRNA and mRNA expression profiling datasets in gastric cancer from the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) identified 79 and 1042 differentially expressed miRNAs and mRNAs, respectively, in gastric cancer. Second, inverse correlations between miRNA and mRNA expression levels identified 3206 miRNA-mRNA pairs combined with 79 dysregulated miRNAs and their 774 target mRNAs predicted by three prediction tools, miRanda, PITA, and RNAhybrid. Additionally, miR-204, which was found to be down-regulated in gastric cancer, was ectopically over-expressed in the AGS gastric cancer cell line and all down-regulated targets were identified by RNA sequencing (RNA-seq) analysis. Over-expression of miR-204 reduced the gastric cancer cell proliferation and suppressed the expression of three targets which were validated by qRT-PCR and luciferase assays. For the first time, we identified that

Indexed as

Gene Expression Regulation, NeoplasticAtlases as TopicBase SequenceBinding SitesCDC2-CDC28 KinasesCell Line, TumorCell ProliferationChemokine CXCL1Databases, GeneticGene Expression ProfilingGene Regulatory NetworksGenes, ReporterHumansLuciferasesMicroRNAsReceptors, G-Protein-CoupledCDC2-CDC28 KinasesChemokine CXCL1CKS1B protein, humanCXCL1 protein, humanGPRC5A protein, humanLuciferasesMicroRNAsMIRN204 microRNA, humanReceptors, G-Protein-Coupledexpression profilinggastric cancerintegrated analysismicroRNA (miRNA)

Identifiers

PMID29283424
PMCPMC5796037

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.