Evidence map›Paper›PMID 29282294›Full record

ArticleThe Journal of biological chemistry2018

Exceptionally high-affinity Ras binders that remodel its effector domain.

John H McGee, So Youn Shim, Seung-Joo Lee, Paige K Swanson, Sam Y Jiang, Michael A Durney, Gregory L Verdine

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Therapeutic developments in pancreatic cancer.Nature reviews. Gastroenterology & hepatology · 2024
    Review
  6. Article
  7. RAS degraders: The new frontier for RAS-driven cancers.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Inhibition of RAS-driven signaling and tumorigenesis with a pan-RAS monobody targeting the Switch I/II pocket.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Review
  14. Targeting the "undruggable" RAS with biologics.Advances in cancer research · 2022
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 3 countries.

John H McGeeFrom the Departments of Molecular and Cellular Biology.ORCID 0000-0002-3440-5247
So Youn ShimStem Cell and Regenerative Biology, and.
Seung-Joo LeeStem Cell and Regenerative Biology, and.
Paige K SwansonStem Cell and Regenerative Biology, and.
Sam Y JiangStem Cell and Regenerative Biology, and.
Michael A DurneyFrom the Departments of Molecular and Cellular Biology.
Gregory L VerdineFrom the Departments of Molecular and Cellular Biology, gregory_verdine@harvard.edu.
Harvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ras proteins are aberrantly activated in a wide range of human cancers, often endowing tumors with aggressive properties and resistance to therapy. Decades of effort to develop direct Ras inhibitors for clinical use have thus far failed, largely because of a lack of adequate small-molecule-binding pockets on the Ras surface. Here, we report the discovery of Ras-binding miniproteins from a naïve library and their evolution to afford versions with midpicomolar affinity to Ras. A series of biochemical experiments indicated that these miniproteins bind to the Ras effector domain as dimers, and high-resolution crystal structures revealed that these miniprotein dimers bind Ras in an unprecedented mode in which the Ras effector domain is remodeled to expose an extended pocket that connects two isolated pockets previously found to engage small-molecule ligands. We also report a Ras point mutant that stabilizes the protein in the open conformation trapped by these miniproteins. These findings provide new tools for studying Ras structure and function and present opportunities for the development of both miniprotein and small-molecule inhibitors that directly target the Ras proteins.

Indexed as

Amino Acid SequenceDatabases, ProteinDrug DiscoveryModels, MolecularMutationProtein BindingProtein DomainsProtein MultimerizationProteinsProtein Structure, Quaternaryras ProteinsProteinsras Proteinscancerdirected evolutionpeptidesRas proteinX-ray crystallography

Identifiers

PMID29282294
PMCPMC5836121
OpenAlexW2776436343

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.